Sarcomere Detection and Contraction Analysis
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java
LICENSE
ParforProgMon.m
README.md
coefficientsmatrix2.m
coefficientsmatrix23.m
dwAggregateTables.m
dwCheckResults.m
dwGenerateSynthMovie.m
dwProcessFolder.m
dwProcessFrame.m
dwProcessSynthFrame.m
dwProcessSynthMovie.m
dwProcessVideo.m
figureQSS.m
listfiles.m
normalize.m
pfpbStart.m
pfpbUpdate.m
sawtooth.m
smorlet2.m
timeLapseViewTool.m

README.md

SarcTrack

Sarcomere Detection and Contraction Analysis

Step 1: 'dwProcessFrame' to test parameters

Step 2: fix parameters in 'dwProcessVideo'

Step 3: 'dwProcessFolder' on a folder with one or two movies

Step 4: 'dwCheckResults' on outputs from step 3; adjust parameters and run again if necessary

Step 5: 'dwProcessFolder' on folder with arbitrary number of movies

Step 6: 'dwAggegateTables' on folders whose tables are to be aggregated

Sample dataset: https://www.dropbox.com/s/k1p65tnfeixp9q0/SarcTrackSampleVideos.zip?dl=0

To generate and analyze synthetic movies, use dwGenerateSynthMovie.m, dwProcessSynthFrame.m, and dwProcessSynthMovie.m