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<?xml version="1.0" encoding="UTF-8"?>
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<SiteRegexp><![CDATA[(?<=[KR])(?!P)]]></SiteRegexp>
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<DatabaseTranslation frames="1 2 3 -1 -2 -3">
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<Measure id="m_error">
<cvParam cvRef="PSI-MS" accession="MS:1001227" name="product ion m/z error" unitAccession="MS:1000040" unitName="m/z" unitCvRef="PSI-MS"/>
</Measure>
</FragmentationTable>
<SpectrumIdentificationResult id="SIR_1" spectrumID="query=1" spectraData_ref="SD_1">
<SpectrumIdentificationItem id="SII_1_1" calculatedMassToCharge="617.380308" chargeState="1" experimentalMassToCharge="617.380865" peptide_ref="peptide_1_1" rank="1" passThreshold="true">
<PeptideEvidenceRef peptideEvidence_ref="PE_1_1_gi|90987750_1"/>
<Fragmentation>
<IonType index="1 2 3 4" charge="1">
<FragmentArray values="104.016 217.101 373.202 486.286 " measure_ref="m_mz"/>
<FragmentArray values="3 3 3 3" measure_ref="m_intensity"/>
<FragmentArray values="-0.0005 0.0005 0.0004 0.0003" measure_ref="m_error"/>
<cvParam cvRef="PSI-MS" accession="MS:1001224" name="frag: b ion"/>
</IonType>
</Fragmentation>
<cvParam accession="MS:1001171" name="mascot:score" cvRef="PSI-MS" value="45.99" />
<cvParam accession="MS:1001172" name="mascot:expectation value" cvRef="PSI-MS" value="2.51767692775885e-005" />
</SpectrumIdentificationItem>
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<cvParam accession="MS:1001030" name="number of peptide seqs compared to each spectrum" cvRef="PSI-MS" value="1" />
</SpectrumIdentificationResult>
<SpectrumIdentificationResult id="SIR_2" spectrumID="query=2" spectraData_ref="SD_1">
<SpectrumIdentificationItem id="SII_2_1" calculatedMassToCharge="839.456266" chargeState="1" experimentalMassToCharge="839.456" peptide_ref="peptide_2_1" rank="1" passThreshold="true">
<PeptideEvidenceRef peptideEvidence_ref="PE_2_1_gi|152812279_1"/>
<Fragmentation>
<IonType index="1 2 3 4 5" charge="1">
<FragmentArray values="114.091 185.128 341.23 527.309 674.377 " measure_ref="m_mz"/>
<FragmentArray values="1 2 3 4 5" measure_ref="m_intensity"/>
<FragmentArray values="-0.0003 -0.0005 0.0004 0.0001 -0.0003" measure_ref="m_error"/>
<cvParam cvRef="PSI-MS" accession="MS:1001224" name="frag: b ion"/>
</IonType>
</Fragmentation>
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</SpectrumIdentificationItem>
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</SpectrumIdentificationResult>
<SpectrumIdentificationResult id="SIR_3" spectrumID="query=3" spectraData_ref="SD_1">
<SpectrumIdentificationItem id="SII_3_1" calculatedMassToCharge="857.487943" chargeState="1" experimentalMassToCharge="857.488485" peptide_ref="peptide_3_1" rank="1" passThreshold="true">
<PeptideEvidenceRef peptideEvidence_ref="PE_3_1_gi|5986_4"/>
<Fragmentation>
<IonType index="1 2 3 4 5 6" charge="1">
<FragmentArray values="72.044 185.128 332.197 461.239 598.298 711.383 " measure_ref="m_mz"/>
<FragmentArray values="6 6 6 6 6 6" measure_ref="m_intensity"/>
<FragmentArray values="-0.0004 -0.0005 0.0001 -0.0005 -0.0004 0.0006" measure_ref="m_error"/>
<cvParam cvRef="PSI-MS" accession="MS:1001224" name="frag: b ion"/>
</IonType>
</Fragmentation>
<cvParam accession="MS:1001171" name="mascot:score" cvRef="PSI-MS" value="70.46" />
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</SpectrumIdentificationItem>
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<cvParam accession="MS:1001030" name="number of peptide seqs compared to each spectrum" cvRef="PSI-MS" value="1" />
<cvParam accession="MS:1000796" name="spectrum title" cvRef="PSI-MS" value="ALFEHIK" />
</SpectrumIdentificationResult>
<SpectrumIdentificationResult id="SIR_4" spectrumID="query=4" spectraData_ref="SD_1">
<SpectrumIdentificationItem id="SII_4_1" calculatedMassToCharge="1015.443937" chargeState="1" experimentalMassToCharge="1015.444455" peptide_ref="peptide_4_1" rank="1" passThreshold="true">
<PeptideEvidenceRef peptideEvidence_ref="PE_4_1_gi|152812279_2"/>
<Fragmentation>
<IonType index="1 2 3 4 5 6 8 9" charge="1">
<FragmentArray values="129.066 244.093 315.13 372.151 459.183 596.242 754.311 869.338 " measure_ref="m_mz"/>
<FragmentArray values="2 2 2 2 2 2 2 2" measure_ref="m_intensity"/>
<FragmentArray values="0.0001 0.0002 0.0001 -0.0004 -0.0004 -0.0003 -0.0005 -0.0004" measure_ref="m_error"/>
<cvParam cvRef="PSI-MS" accession="MS:1001224" name="frag: b ion"/>
</IonType>
</Fragmentation>
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</SpectrumIdentificationItem>
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<cvParam accession="MS:1001030" name="number of peptide seqs compared to each spectrum" cvRef="PSI-MS" value="1" />
</SpectrumIdentificationResult>
</SpectrumIdentificationList>
<ProteinDetectionList id="PDL_1">
<ProteinAmbiguityGroup id="PAG_hit_1" >
<ProteinDetectionHypothesis id="PDH_gi|152812279_-1" dBSequence_ref="DBSeq_gi|152812279" passThreshold="true">
<PeptideHypothesis peptideEvidence_ref="PE_2_1_gi|152812279_1">
<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_2_1"/>
</PeptideHypothesis>
<PeptideHypothesis peptideEvidence_ref="PE_4_1_gi|152812279_2">
<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_4_1"/>
</PeptideHypothesis>
<cvParam accession="MS:1001171" name="mascot:score" cvRef="PSI-MS" value="131.23" />
<cvParam accession="MS:1001093" name="sequence coverage" cvRef="PSI-MS" value="9" />
<cvParam accession="MS:1001097" name="distinct peptide sequences" cvRef="PSI-MS" value="2" />
</ProteinDetectionHypothesis>
</ProteinAmbiguityGroup>
<ProteinAmbiguityGroup id="PAG_hit_2" >
<ProteinDetectionHypothesis id="PDH_gi|5986_4" dBSequence_ref="DBSeq_gi|5986" passThreshold="true">
<PeptideHypothesis peptideEvidence_ref="PE_3_1_gi|5986_4">
<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_3_1"/>
</PeptideHypothesis>
<cvParam accession="MS:1001171" name="mascot:score" cvRef="PSI-MS" value="70.46" />
<cvParam accession="MS:1001093" name="sequence coverage" cvRef="PSI-MS" value="5" />
<cvParam accession="MS:1001097" name="distinct peptide sequences" cvRef="PSI-MS" value="1" />
</ProteinDetectionHypothesis>
</ProteinAmbiguityGroup>
<ProteinAmbiguityGroup id="PAG_hit_3" >
<ProteinDetectionHypothesis id="PDH_gi|90987750_1" dBSequence_ref="DBSeq_gi|90987750" passThreshold="true">
<PeptideHypothesis peptideEvidence_ref="PE_1_1_gi|90987750_1">
<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_1_1"/>
</PeptideHypothesis>
<cvParam accession="MS:1001171" name="mascot:score" cvRef="PSI-MS" value="45.99" />
<cvParam accession="MS:1001093" name="sequence coverage" cvRef="PSI-MS" value="9" />
<cvParam accession="MS:1001097" name="distinct peptide sequences" cvRef="PSI-MS" value="1" />
</ProteinDetectionHypothesis>
</ProteinAmbiguityGroup>
</ProteinDetectionList>
</AnalysisData>
</DataCollection>
<BibliographicReference authors="David N. Perkins, Darryl J. C. Pappin, David M. Creasy, John S. Cottrell" editor="" id="10.1002/(SICI)1522-2683(19991201)20:18&lt;3551::AID-ELPS3551&gt;3.0.CO;2-2" name="Probability-based protein identification by searching sequence databases using mass spectrometry data" issue="18" pages="3551-3567" publication="Electrophoresis" volume="20" year="1999" publisher="Wiley VCH" title="Probability-based protein identification by searching sequence databases using mass spectrometry data"/>
</MzIdentML>