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Meta-Stroms 1.2

Environment Variable:
export MetaStorms=The root path of MetaStorms

Install:
make

Make index:
bin/make_index [options] value
    option :
    -i samples input path, must be the absolute path
    -o index output path
    -n database name
    -h help
or

bin/add_index [options] value
    option :
    t-i samples input path
    t-d database index name
    t-o index output path
    t-h help

Query:
bin/query_index [options] value
    option : 
    -d database index name
    -i query sample path
    -o result output file, default is to output on screen
    -n hit number, default is 5
    -e exhaustive search
    -n cpu core number, default is 1
    -h help

More details please check the "maunal" in this directory.

Notice:
Meta-Storms now accepts the metagenomic samples analysis results pre-computed by Parallel-META(http://www.computationalbioenergy.org/parallel-meta.html)
When making database index, the samples input path must be the absolute path containing metagenomic samples analysis results by Parallel-META.
When quering, the query samples should also be pre-computed by Parallel-META and input file is the "classification.txt" of analysis results.

About

Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data.

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