export MetaStorms=The root path of MetaStorms
bin/make_index [options] value
-i samples input path, must be the absolute path
-o index output path
-n database name
bin/add_index [options] value
t-i samples input path
t-d database index name
t-o index output path
bin/query_index [options] value
-d database index name
-i query sample path
-o result output file, default is to output on screen
-n hit number, default is 5
-e exhaustive search
-n cpu core number, default is 1
More details please check the "maunal" in this directory.
Meta-Storms now accepts the metagenomic samples analysis results pre-computed by Parallel-META(http://www.computationalbioenergy.org/parallel-meta.html)
When making database index, the samples input path must be the absolute path containing metagenomic samples analysis results by Parallel-META.
When quering, the query samples should also be pre-computed by Parallel-META and input file is the "classification.txt" of analysis results.
Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data.