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README.md

PyPI version

LiMMBo

LiMMBo enables multivariate analysis of high-dimensional phenotypes based on linear mixed models with bootstrapping (LiMMBo). LiMMBo is available as an open source Python module. It builds on and can be used in combination with LIMIX, a flexible and efficient linear mixed model library with interfaces to Python.

A description of the public interface can be found here .

Install

LiMMBo is available on the Python Package Index. LiMMBo is dependent on Limix LIMIX, however the latest Limix release does not include multi-variate models (see issue #7). While waiting for the updated Limix release please install as follows:

Install LIMIX with multi-variate support (v1.0.18):

pip3 install "limix<2"

After successful installation of LIMIX, simply install LiMMBo via

pip3 install limmbo

Recently, an R wrapper package for limmbo was created - this independent project can be found here.

Problems

If you encounter any issue, please, submit them .

License

This project is licensed under the Apache License (Version 2.0, January 2004) - see the LICENSE file for details

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