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Package: PSCBS
Version: 0.64.0
Depends:
R (>= 3.2.0),
utils
Imports:
R.methodsS3 (>= 1.7.1),
R.oo (>= 1.21.0),
R.utils (>= 2.5.0),
R.cache (>= 0.12.0),
matrixStats (>= 0.52.2),
aroma.light (>= 2.4.0),
DNAcopy (>= 1.42.0),
listenv (>= 0.6.0),
future (>= 1.5.0),
parallel
Suggests:
Hmisc (>= 3.16-0),
R.rsp (>= 0.41.0),
R.devices (>= 2.15.1),
ggplot2 (>= 2.2.1)
SuggestsNote:
BioC (>= 3.1),
Recommended:
Hmisc
VignetteBuilder: R.rsp
Title: Analysis of Parent-Specific DNA Copy Numbers
Authors@R: c(
person("Henrik", "Bengtsson", role=c("aut", "cre", "cph"),
email="henrikb@braju.com"),
person("Pierre", "Neuvial", role="aut"),
person("Venkatraman E.", "Seshan", role="aut"),
person("Adam B.", "Olshen", role="aut"),
person("Paul T.", "Spellman", role="aut"),
person("Richard A.", "Olshen", role="aut"))
Description: Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
License: GPL (>= 2)
LazyLoad: TRUE
ByteCompile: TRUE
biocViews: aCGH, CopyNumberVariants, SNP, Microarray, OneChannel, TwoChannel, Genetics
URL: https://github.com/HenrikBengtsson/PSCBS
BugReports: https://github.com/HenrikBengtsson/PSCBS/issues
RoxygenNote: 6.0.1