diff --git a/.github/workflows/check-bash.yml b/.github/workflows/check-bash.yml
index 2ba82d6..69c124f 100644
--- a/.github/workflows/check-bash.yml
+++ b/.github/workflows/check-bash.yml
@@ -63,5 +63,5 @@ jobs:
         export PATH=$PWD/bats-core-1.10.0/bin:$PATH
         export PATH=$PWD/bash:$PATH
         bats --version
-        cd bash/tests/
-        bats *.bats
+        cd bash/
+        make check-cli
diff --git a/.github/workflows/check-python.yml b/.github/workflows/check-python.yml
index 13b6428..c729c69 100644
--- a/.github/workflows/check-python.yml
+++ b/.github/workflows/check-python.yml
@@ -75,8 +75,8 @@ jobs:
         export PATH=$PWD/bats-core-1.10.0/bin:$PATH
         bash --version
         bats --version
-        cd python/tests/
-        bats *.bats
+        cd python/
+        make check-cli
 
     - name: Lint with flake8
       if: matrix.config.python == '3.10'
diff --git a/.github/workflows/check-r.yml b/.github/workflows/check-r.yml
index 60536c0..5c610a2 100644
--- a/.github/workflows/check-r.yml
+++ b/.github/workflows/check-r.yml
@@ -113,8 +113,9 @@ jobs:
           export PATH=$PWD/bats-core-1.10.0/bin:$PATH
           bash --version
           bats --version
-          cd r/tests/
-          bats *.bats
+          cd r/
+          make check-cli
+
 
       - name: Upload check results
         if: failure()