diff --git a/ovrlpy/_ovrlp.py b/ovrlpy/_ovrlp.py index 32a6ffa..20e1449 100644 --- a/ovrlpy/_ovrlp.py +++ b/ovrlpy/_ovrlp.py @@ -522,9 +522,21 @@ class Visualizer: n_components_pca : float Number of components for PCA. umap_kwargs : dict - Keyword arguments for 2D UMAP embedding. + Keyword arguments for 2D UMAP embedding object. cumap_kwargs : dict - + Keyword arguments for 3D UMAP RGB embedding object. + genes : list + A list of genes to utilize in the model. + embedding : np.ndarray + The 2d embedding of localmax gene expression regions-of-interest. + colors : np.ndarray + The RGB embedding. + colors_min_max : list + The minimum and maximum values of the RGB embedding, necessary for normalization of the transform method. + coherence_map : np.ndarray + The coherence map of the tissue. + signal_map : np.ndarray + A pixel map of overall signal strength in the tissue, used to mask out low-signal regions that are difficult to interpret. """ def __init__(