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Homebrew-called shimmed clang unable to find OpenMP whereas default clang can #4974

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bbercovici opened this Issue Sep 24, 2018 · 3 comments

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bbercovici commented Sep 24, 2018

Please note we will close your issue without comment if you delete, do not read or do not fill out the issue checklist below and provide ALL the requested information. If you repeatedly fail to use the issue template, we will block you from ever submitting issues to Homebrew again.

  • are reporting a bug others will be able to reproduce and not asking a question. If you're not sure or want to ask a question do so on our Discourse: https://discourse.brew.sh
  • ran a brew command and reproduced the problem with multiple formulae? If it's a problem with a single, official formula (not cask) please file this issue at Homebrew/homebrew-core: https://github.com/Homebrew/homebrew-core/issues/new/choose. If it's a brew cask problem please file this issue at https://github.com/Homebrew/homebrew-cask/issues/new/choose. If it's a tap (e.g. Homebrew/homebrew-php) problem please file this issue at the tap.
  • ran brew update and can still reproduce the problem?
  • ran brew doctor, fixed all issues and can still reproduce the problem?
  • ran brew config and brew doctor and included their output with your issue?

What I was trying to do

I was trying to install sharmlib from a custom formula . The latest version of Clang supports OpenMP so I was converting my formulae back to using the default compiler. clang --version returns

Apple LLVM version 10.0.0 (clang-1000.10.44.2)
Target: x86_64-apple-darwin17.7.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin

What happened

  • Short story: Homebrew-called cmake uses a faulty compiler unable to find OpenMP definitions.
  • Long story: running brew install sharmlib --verbose shows that Homebrew calls
    /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++. I'm guessing this guy is the culprit as it does not mirror the most-recent clang actually present on my system

What I expected to happen

Installing sharmlib from source proceeds smoothly as the default clang at /usr/bin/clang is called by cmake. I was thus expecting Homebrew to call the exact same default clang at /usr/bin/clang and not the shimmed one.

Step-by-step reproduction instructions

brew tap bbercovici/self
brew update
brew install sharmlib --verbose

The most relevant part of the brew install ... trace


==> cmake . -DBREW:BOOL=TRUE
-- The C compiler identification is AppleClang 10.0.0.10001044
-- The CXX compiler identification is AppleClang 10.0.0.10001044
-- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang
-- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++
-- Check for working CXX compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Armadillo: /usr/local/lib/libarmadillo.dylib (found version "9.100.5") 
-- Could NOT find OpenMP_C (missing: OpenMP_C_FLAGS OpenMP_C_LIB_NAMES) 
-- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES) 
-- Could NOT find OpenMP (missing: OpenMP_C_FOUND OpenMP_CXX_FOUND) 
-- Configuring done
CMake Error at CMakeLists.txt:68 (add_library):
  Target "SHARMLib" links to target "OpenMP::OpenMP_CXX" but the target was
  not found.  Perhaps a find_package() call is missing for an IMPORTED
  target, or an ALIAS target is missing?


-- Generating done
-- Build files have been written to: /tmp/sharmlib-20180924-96694-1uqeym/SHARMLib-1.0.7

==> Formula
Tap: bbercovici/self
Path: /usr/local/Homebrew/Library/Taps/bbercovici/homebrew-self/Formula/sharmlib.rb
==> Configuration
HOMEBREW_VERSION: 1.7.6-6-g899bfbc
ORIGIN: https://github.com/Homebrew/brew
HEAD: 899bfbcaf184bdda50f635e11c269675d3b7cda5
Last commit: 5 hours ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: fe7334d3c60777926ec25d42e40546601ea3c662
Core tap last commit: 50 minutes ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_DEV_CMD_RUN: 1
HOMEBREW_ENABLE_AUTO_UPDATE_MIGRATION: 1
CPU: quad-core 64-bit broadwell
Homebrew Ruby: 2.3.7 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/bin/ruby
Clang: 10.0 build 1000
Git: 2.17.1 => /Library/Developer/CommandLineTools/usr/bin/git
Curl: 7.54.0 => /usr/bin/curl
Java: 1.7.0_80
macOS: 10.13.6-x86_64
CLT: 10.0.0.0.1.1535735448
CLT headers: N/A
Xcode: 10.0
XQuartz: 2.7.11 => /opt/X11
==> ENV
HOMEBREW_CC: clang
HOMEBREW_CXX: clang++
MAKEFLAGS: -j4
CMAKE_PREFIX_PATH: /usr/local
CMAKE_INCLUDE_PATH: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2:/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
CMAKE_LIBRARY_PATH: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/10.13
HOMEBREW_GIT: git
HOMEBREW_SDKROOT: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
ACLOCAL_PATH: /usr/local/share/aclocal
PATH: /usr/local/Homebrew/Library/Homebrew/shims/mac/super:/usr/local/opt/cmake/bin:/usr/bin:/bin:/usr/sbin:/sbin

brew config


HOMEBREW_VERSION: 1.7.6-6-g899bfbc
ORIGIN: https://github.com/Homebrew/brew
HEAD: 899bfbcaf184bdda50f635e11c269675d3b7cda5
Last commit: 5 hours ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: fe7334d3c60777926ec25d42e40546601ea3c662
Core tap last commit: 40 minutes ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_DEV_CMD_RUN: 1
CPU: quad-core 64-bit broadwell
Homebrew Ruby: 2.3.7 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/bin/ruby
Clang: 10.0 build 1000
Git: 2.17.1 => /Library/Developer/CommandLineTools/usr/bin/git
Curl: 7.54.0 => /usr/bin/curl
Java: 1.7.0_80
macOS: 10.13.6-x86_64
CLT: 10.0.0.0.1.1535735448
CLT headers: N/A
Xcode: 10.0
XQuartz: 2.7.11 => /opt/X11

brew doctor

Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry or file an issue; just ignore this. Thanks!

Warning: "config" scripts exist outside your system or Homebrew directories.
`./configure` scripts often look for *-config scripts to determine if
software packages are installed, and what additional flags to use when
compiling and linking.

Having additional scripts in your path can confuse software installed via
Homebrew if the config script overrides a system or Homebrew provided
script of the same name. We found the following "config" scripts:
  /Users/bbercovici/miniconda2/bin/python2-config
  /Users/bbercovici/miniconda2/bin/icu-config
  /Users/bbercovici/miniconda2/bin/freetype-config
  /Users/bbercovici/miniconda2/bin/xslt-config
  /Users/bbercovici/miniconda2/bin/libpng16-config
  /Users/bbercovici/miniconda2/bin/python2.7-config
  /Users/bbercovici/miniconda2/bin/libpng-config
  /Users/bbercovici/miniconda2/bin/xml2-config
  /Users/bbercovici/miniconda2/bin/python-config
  /Users/bbercovici/miniconda2/bin/ncursesw6-config
  /anaconda2/bin/python2-config
  /anaconda2/bin/icu-config
  /anaconda2/bin/freetype-config
  /anaconda2/bin/xslt-config
  /anaconda2/bin/libpng16-config
  /anaconda2/bin/python2.7-config
  /anaconda2/bin/libpng-config
  /anaconda2/bin/xml2-config
  /anaconda2/bin/python-config
  /anaconda2/bin/curl-config
  /anaconda2/bin/ncursesw6-config
  /anaconda2/bin/pcre-config

Warning: gettext files detected at a system prefix.
These files can cause compilation and link failures, especially if they
are compiled with improper architectures. Consider removing these files:
  /usr/local/lib/libgettextlib.dylib
  /usr/local/lib/libintl.dylib
  /usr/local/include/libintl.h
  /usr/local/lib/libgettextlib.dylib
  /usr/local/lib/libintl.dylib
  /usr/local/include/libintl.h

Warning: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected dylibs:
  /usr/local/lib/BugpointPasses.dylib
  /usr/local/lib/LLVMHello.dylib
  /usr/local/lib/libASPEN.dylib
  /usr/local/lib/libCGAL_interface.dylib
  /usr/local/lib/libLTO.dylib
  /usr/local/lib/libasprintf.0.dylib
  /usr/local/lib/libassimp.3.3.1.dylib
  /usr/local/lib/libgettextlib-0.19.8.1.dylib
  /usr/local/lib/libgettextpo.0.dylib
  /usr/local/lib/libgettextsrc-0.19.8.1.dylib
  /usr/local/lib/libintl.8.dylib
  /usr/local/lib/libmpfr.4.dylib
  /usr/local/lib/libomp.dylib
  /usr/local/lib/libopenjp2.2.3.0.dylib
  /usr/local/lib/libqhull.5.dylib

Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected header files:
  /usr/local/include/assimp/Compiler/poppack1.h
  /usr/local/include/assimp/Compiler/pstdint.h
  /usr/local/include/assimp/Compiler/pushpack1.h
  /usr/local/include/assimp/ai_assert.h
  /usr/local/include/assimp/anim.h
  /usr/local/include/assimp/camera.h
  /usr/local/include/assimp/cexport.h
  /usr/local/include/assimp/cfileio.h
  /usr/local/include/assimp/cimport.h
  /usr/local/include/assimp/color4.h
  /usr/local/include/assimp/config.h
  /usr/local/include/assimp/defs.h
  /usr/local/include/assimp/importerdesc.h
  /usr/local/include/assimp/light.h
  /usr/local/include/assimp/material.h
  /usr/local/include/assimp/matrix3x3.h
  /usr/local/include/assimp/matrix4x4.h
  /usr/local/include/assimp/mesh.h
  /usr/local/include/assimp/metadata.h
  /usr/local/include/assimp/postprocess.h
  /usr/local/include/assimp/quaternion.h
  /usr/local/include/assimp/scene.h
  /usr/local/include/assimp/texture.h
  /usr/local/include/assimp/types.h
  /usr/local/include/assimp/vector2.h
  /usr/local/include/assimp/vector3.h
  /usr/local/include/assimp/version.h
  /usr/local/include/autosprintf.h
  /usr/local/include/eigen/Eigen/src/Cholesky/LDLT.h
  /usr/local/include/eigen/Eigen/src/Cholesky/LLT.h
  /usr/local/include/eigen/Eigen/src/Cholesky/LLT_MKL.h
  /usr/local/include/eigen/Eigen/src/CholmodSupport/CholmodSupport.h
  /usr/local/include/eigen/Eigen/src/Core/Array.h
  /usr/local/include/eigen/Eigen/src/Core/ArrayBase.h
  /usr/local/include/eigen/Eigen/src/Core/ArrayWrapper.h
  /usr/local/include/eigen/Eigen/src/Core/Assign.h
  /usr/local/include/eigen/Eigen/src/Core/Assign_MKL.h
  /usr/local/include/eigen/Eigen/src/Core/BandMatrix.h
  /usr/local/include/eigen/Eigen/src/Core/Block.h
  /usr/local/include/eigen/Eigen/src/Core/BooleanRedux.h
  /usr/local/include/eigen/Eigen/src/Core/CommaInitializer.h
  /usr/local/include/eigen/Eigen/src/Core/CoreIterators.h
  /usr/local/include/eigen/Eigen/src/Core/CwiseBinaryOp.h
  /usr/local/include/eigen/Eigen/src/Core/CwiseNullaryOp.h
  /usr/local/include/eigen/Eigen/src/Core/CwiseUnaryOp.h
  /usr/local/include/eigen/Eigen/src/Core/CwiseUnaryView.h
  /usr/local/include/eigen/Eigen/src/Core/DenseBase.h
  /usr/local/include/eigen/Eigen/src/Core/DenseCoeffsBase.h
  /usr/local/include/eigen/Eigen/src/Core/DenseStorage.h
  /usr/local/include/eigen/Eigen/src/Core/Diagonal.h
  /usr/local/include/eigen/Eigen/src/Core/DiagonalMatrix.h
  /usr/local/include/eigen/Eigen/src/Core/DiagonalProduct.h
  /usr/local/include/eigen/Eigen/src/Core/Dot.h
  /usr/local/include/eigen/Eigen/src/Core/EigenBase.h
  /usr/local/include/eigen/Eigen/src/Core/Flagged.h
  /usr/local/include/eigen/Eigen/src/Core/ForceAlignedAccess.h
  /usr/local/include/eigen/Eigen/src/Core/Functors.h
  /usr/local/include/eigen/Eigen/src/Core/Fuzzy.h
  /usr/local/include/eigen/Eigen/src/Core/GeneralProduct.h
  /usr/local/include/eigen/Eigen/src/Core/GenericPacketMath.h
  /usr/local/include/eigen/Eigen/src/Core/GlobalFunctions.h
  /usr/local/include/eigen/Eigen/src/Core/IO.h
  /usr/local/include/eigen/Eigen/src/Core/Map.h
  /usr/local/include/eigen/Eigen/src/Core/MapBase.h
  /usr/local/include/eigen/Eigen/src/Core/MathFunctions.h
  /usr/local/include/eigen/Eigen/src/Core/Matrix.h
  /usr/local/include/eigen/Eigen/src/Core/MatrixBase.h
  /usr/local/include/eigen/Eigen/src/Core/NestByValue.h
  /usr/local/include/eigen/Eigen/src/Core/NoAlias.h
  /usr/local/include/eigen/Eigen/src/Core/NumTraits.h
  /usr/local/include/eigen/Eigen/src/Core/PermutationMatrix.h
  /usr/local/include/eigen/Eigen/src/Core/PlainObjectBase.h
  /usr/local/include/eigen/Eigen/src/Core/ProductBase.h
  /usr/local/include/eigen/Eigen/src/Core/Random.h
  /usr/local/include/eigen/Eigen/src/Core/Redux.h
  /usr/local/include/eigen/Eigen/src/Core/Ref.h
  /usr/local/include/eigen/Eigen/src/Core/Replicate.h
  /usr/local/include/eigen/Eigen/src/Core/ReturnByValue.h
  /usr/local/include/eigen/Eigen/src/Core/Reverse.h
  /usr/local/include/eigen/Eigen/src/Core/Select.h
  /usr/local/include/eigen/Eigen/src/Core/SelfAdjointView.h
  /usr/local/include/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h
  /usr/local/include/eigen/Eigen/src/Core/SolveTriangular.h
  /usr/local/include/eigen/Eigen/src/Core/StableNorm.h
  /usr/local/include/eigen/Eigen/src/Core/Stride.h
  /usr/local/include/eigen/Eigen/src/Core/Swap.h
  /usr/local/include/eigen/Eigen/src/Core/Transpose.h
  /usr/local/include/eigen/Eigen/src/Core/Transpositions.h
  /usr/local/include/eigen/Eigen/src/Core/TriangularMatrix.h
  /usr/local/include/eigen/Eigen/src/Core/VectorBlock.h
  /usr/local/include/eigen/Eigen/src/Core/VectorwiseOp.h
  /usr/local/include/eigen/Eigen/src/Core/Visitor.h
  /usr/local/include/eigen/Eigen/src/Core/arch/AltiVec/Complex.h
  /usr/local/include/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h
  /usr/local/include/eigen/Eigen/src/Core/arch/Default/Settings.h
  /usr/local/include/eigen/Eigen/src/Core/arch/NEON/Complex.h
  /usr/local/include/eigen/Eigen/src/Core/arch/NEON/PacketMath.h
  /usr/local/include/eigen/Eigen/src/Core/arch/SSE/Complex.h
  /usr/local/include/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h
  /usr/local/include/eigen/Eigen/src/Core/arch/SSE/PacketMath.h
  /usr/local/include/eigen/Eigen/src/Core/products/CoeffBasedProduct.h
  /usr/local/include/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h
  /usr/local/include/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h
  /usr/local/include/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
  /usr/local/include/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_MKL.h
  /usr/local/include/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_MKL.h
  /usr/local/include/eigen/Eigen/src/Core/products/GeneralMatrixVector.h
  /usr/local/include/eigen/Eigen/src/Core/products/GeneralMatrixVector_MKL.h
  /usr/local/include/eigen/Eigen/src/Core/products/Parallelizer.h
  /usr/local/include/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
  /usr/local/include/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_MKL.h
  /usr/local/include/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h
  /usr/local/include/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_MKL.h
  /usr/local/include/eigen/Eigen/src/Core/products/SelfadjointProduct.h
  /usr/local/include/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h
  /usr/local/include/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h
  /usr/local/include/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_MKL.h
  /usr/local/include/eigen/Eigen/src/Core/products/TriangularMatrixVector.h
  /usr/local/include/eigen/Eigen/src/Core/products/TriangularMatrixVector_MKL.h
  /usr/local/include/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h
  /usr/local/include/eigen/Eigen/src/Core/products/TriangularSolverMatrix_MKL.h
  /usr/local/include/eigen/Eigen/src/Core/products/TriangularSolverVector.h
  /usr/local/include/eigen/Eigen/src/Core/util/BlasUtil.h
  /usr/local/include/eigen/Eigen/src/Core/util/Constants.h
  /usr/local/include/eigen/Eigen/src/Core/util/DisableStupidWarnings.h
  /usr/local/include/eigen/Eigen/src/Core/util/ForwardDeclarations.h
  /usr/local/include/eigen/Eigen/src/Core/util/MKL_support.h
  /usr/local/include/eigen/Eigen/src/Core/util/Macros.h
  /usr/local/include/eigen/Eigen/src/Core/util/Memory.h
  /usr/local/include/eigen/Eigen/src/Core/util/Meta.h
  /usr/local/include/eigen/Eigen/src/Core/util/NonMPL2.h
  /usr/local/include/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h
  /usr/local/include/eigen/Eigen/src/Core/util/StaticAssert.h
  /usr/local/include/eigen/Eigen/src/Core/util/XprHelper.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Block.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Cwise.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/CwiseOperators.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Geometry/AlignedBox.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Geometry/All.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Geometry/AngleAxis.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Geometry/Hyperplane.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Geometry/Quaternion.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Geometry/Rotation2D.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Geometry/RotationBase.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Geometry/Scaling.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Geometry/Transform.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Geometry/Translation.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/LU.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Lazy.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/LeastSquares.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Macros.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/MathFunctions.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Memory.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Meta.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/Minor.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/QR.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/SVD.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/TriangularSolver.h
  /usr/local/include/eigen/Eigen/src/Eigen2Support/VectorBlock.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/ComplexSchur.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/ComplexSchur_MKL.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/EigenSolver.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/RealQZ.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/RealSchur.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/RealSchur_MKL.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_MKL.h
  /usr/local/include/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h
  /usr/local/include/eigen/Eigen/src/Geometry/AlignedBox.h
  /usr/local/include/eigen/Eigen/src/Geometry/AngleAxis.h
  /usr/local/include/eigen/Eigen/src/Geometry/EulerAngles.h
  /usr/local/include/eigen/Eigen/src/Geometry/Homogeneous.h
  /usr/local/include/eigen/Eigen/src/Geometry/Hyperplane.h
  /usr/local/include/eigen/Eigen/src/Geometry/OrthoMethods.h
  /usr/local/include/eigen/Eigen/src/Geometry/ParametrizedLine.h
  /usr/local/include/eigen/Eigen/src/Geometry/Quaternion.h
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  /usr/local/include/llvm/Transforms/Scalar/IVUsersPrinter.h
  /usr/local/include/llvm/Transforms/Scalar/IndVarSimplify.h
  /usr/local/include/llvm/Transforms/Scalar/JumpThreading.h
  /usr/local/include/llvm/Transforms/Scalar/LICM.h
  /usr/local/include/llvm/Transforms/Scalar/LoopAccessAnalysisPrinter.h
  /usr/local/include/llvm/Transforms/Scalar/LoopDataPrefetch.h
  /usr/local/include/llvm/Transforms/Scalar/LoopDeletion.h
  /usr/local/include/llvm/Transforms/Scalar/LoopDistribute.h
  /usr/local/include/llvm/Transforms/Scalar/LoopIdiomRecognize.h
  /usr/local/include/llvm/Transforms/Scalar/LoopInstSimplify.h
  /usr/local/include/llvm/Transforms/Scalar/LoopPassManager.h
  /usr/local/include/llvm/Transforms/Scalar/LoopRotation.h
  /usr/local/include/llvm/Transforms/Scalar/LoopSimplifyCFG.h
  /usr/local/include/llvm/Transforms/Scalar/LoopStrengthReduce.h
  /usr/local/include/llvm/Transforms/Scalar/LoopUnrollPass.h
  /usr/local/include/llvm/Transforms/Scalar/LowerAtomic.h
  /usr/local/include/llvm/Transforms/Scalar/LowerExpectIntrinsic.h
  /usr/local/include/llvm/Transforms/Scalar/LowerGuardIntrinsic.h
  /usr/local/include/llvm/Transforms/Scalar/MemCpyOptimizer.h
  /usr/local/include/llvm/Transforms/Scalar/MergedLoadStoreMotion.h
  /usr/local/include/llvm/Transforms/Scalar/NaryReassociate.h
  /usr/local/include/llvm/Transforms/Scalar/NewGVN.h
  /usr/local/include/llvm/Transforms/Scalar/PartiallyInlineLibCalls.h
  /usr/local/include/llvm/Transforms/Scalar/Reassociate.h
  /usr/local/include/llvm/Transforms/Scalar/SCCP.h
  /usr/local/include/llvm/Transforms/Scalar/SROA.h
  /usr/local/include/llvm/Transforms/Scalar/SimplifyCFG.h
  /usr/local/include/llvm/Transforms/Scalar/Sink.h
  /usr/local/include/llvm/Transforms/Scalar/SpeculativeExecution.h
  /usr/local/include/llvm/Transforms/Scalar/TailRecursionElimination.h
  /usr/local/include/llvm/Transforms/Utils/ASanStackFrameLayout.h
  /usr/local/include/llvm/Transforms/Utils/AddDiscriminators.h
  /usr/local/include/llvm/Transforms/Utils/BasicBlockUtils.h
  /usr/local/include/llvm/Transforms/Utils/BreakCriticalEdges.h
  /usr/local/include/llvm/Transforms/Utils/BuildLibCalls.h
  /usr/local/include/llvm/Transforms/Utils/BypassSlowDivision.h
  /usr/local/include/llvm/Transforms/Utils/Cloning.h
  /usr/local/include/llvm/Transforms/Utils/CmpInstAnalysis.h
  /usr/local/include/llvm/Transforms/Utils/CodeExtractor.h
  /usr/local/include/llvm/Transforms/Utils/CtorUtils.h
  /usr/local/include/llvm/Transforms/Utils/EscapeEnumerator.h
  /usr/local/include/llvm/Transforms/Utils/Evaluator.h
  /usr/local/include/llvm/Transforms/Utils/FunctionComparator.h
  /usr/local/include/llvm/Transforms/Utils/FunctionImportUtils.h
  /usr/local/include/llvm/Transforms/Utils/GlobalStatus.h
  /usr/local/include/llvm/Transforms/Utils/ImportedFunctionsInliningStatistics.h
  /usr/local/include/llvm/Transforms/Utils/IntegerDivision.h
  /usr/local/include/llvm/Transforms/Utils/LCSSA.h
  /usr/local/include/llvm/Transforms/Utils/LibCallsShrinkWrap.h
  /usr/local/include/llvm/Transforms/Utils/Local.h
  /usr/local/include/llvm/Transforms/Utils/LoopSimplify.h
  /usr/local/include/llvm/Transforms/Utils/LoopUtils.h
  /usr/local/include/llvm/Transforms/Utils/LoopVersioning.h
  /usr/local/include/llvm/Transforms/Utils/LowerInvoke.h
  /usr/local/include/llvm/Transforms/Utils/Mem2Reg.h
  /usr/local/include/llvm/Transforms/Utils/MemorySSA.h
  /usr/local/include/llvm/Transforms/Utils/ModuleUtils.h
  /usr/local/include/llvm/Transforms/Utils/NameAnonGlobals.h
  /usr/local/include/llvm/Transforms/Utils/PromoteMemToReg.h
  /usr/local/include/llvm/Transforms/Utils/SSAUpdater.h
  /usr/local/include/llvm/Transforms/Utils/SSAUpdaterImpl.h
  /usr/local/include/llvm/Transforms/Utils/SanitizerStats.h
  /usr/local/include/llvm/Transforms/Utils/SimplifyIndVar.h
  /usr/local/include/llvm/Transforms/Utils/SimplifyInstructions.h
  /usr/local/include/llvm/Transforms/Utils/SimplifyLibCalls.h
  /usr/local/include/llvm/Transforms/Utils/SplitModule.h
  /usr/local/include/llvm/Transforms/Utils/SymbolRewriter.h
  /usr/local/include/llvm/Transforms/Utils/UnifyFunctionExitNodes.h
  /usr/local/include/llvm/Transforms/Utils/UnrollLoop.h
  /usr/local/include/llvm/Transforms/Utils/ValueMapper.h
  /usr/local/include/llvm/Transforms/Vectorize.h
  /usr/local/include/llvm/Transforms/Vectorize/LoopVectorize.h
  /usr/local/include/llvm/Transforms/Vectorize/SLPVectorizer.h
  /usr/local/include/llvm/XRay/Trace.h
  /usr/local/include/llvm/XRay/XRayRecord.h
  /usr/local/include/llvm/XRay/YAMLXRayRecord.h
  /usr/local/include/omp.h
  /usr/local/include/openjpeg-2.3/openjpeg.h
  /usr/local/include/openjpeg-2.3/opj_config.h
  /usr/local/include/openjpeg-2.3/opj_stdint.h
  /usr/local/include/qhull/geom.h
  /usr/local/include/qhull/io.h
  /usr/local/include/qhull/mem.h
  /usr/local/include/qhull/merge.h
  /usr/local/include/qhull/poly.h
  /usr/local/include/qhull/qhull.h
  /usr/local/include/qhull/qhull_a.h
  /usr/local/include/qhull/qset.h
  /usr/local/include/qhull/stat.h
  /usr/local/include/qhull/user.h
  /usr/local/include/slu_Cnames.h
  /usr/local/include/slu_cdefs.h
  /usr/local/include/slu_dcomplex.h
  /usr/local/include/slu_ddefs.h
  /usr/local/include/slu_scomplex.h
  /usr/local/include/slu_sdefs.h
  /usr/local/include/slu_util.h
  /usr/local/include/slu_zdefs.h
  /usr/local/include/superlu_enum_consts.h
  /usr/local/include/supermatrix.h

Warning: Unbrewed .la files were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected .la files:
  /usr/local/lib/libasprintf.la
  /usr/local/lib/libgettextlib.la
  /usr/local/lib/libgettextpo.la
  /usr/local/lib/libgettextsrc.la
  /usr/local/lib/libintl.la
  /usr/local/lib/libmpfr.la
  /usr/local/lib/libqhull.la

Warning: Unbrewed .pc files were found in /usr/local/lib/pkgconfig.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected .pc files:
  /usr/local/lib/pkgconfig/assimp.pc
  /usr/local/lib/pkgconfig/libopenjp2.pc

Warning: Unbrewed static libraries were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected static libraries:
  /usr/local/lib/libLLVMAArch64AsmParser.a
  /usr/local/lib/libLLVMAArch64AsmPrinter.a
  /usr/local/lib/libLLVMAArch64CodeGen.a
  /usr/local/lib/libLLVMAArch64Desc.a
  /usr/local/lib/libLLVMAArch64Disassembler.a
  /usr/local/lib/libLLVMAArch64Info.a
  /usr/local/lib/libLLVMAArch64Utils.a
  /usr/local/lib/libLLVMAMDGPUAsmParser.a
  /usr/local/lib/libLLVMAMDGPUAsmPrinter.a
  /usr/local/lib/libLLVMAMDGPUCodeGen.a
  /usr/local/lib/libLLVMAMDGPUDesc.a
  /usr/local/lib/libLLVMAMDGPUDisassembler.a
  /usr/local/lib/libLLVMAMDGPUInfo.a
  /usr/local/lib/libLLVMAMDGPUUtils.a
  /usr/local/lib/libLLVMARMAsmParser.a
  /usr/local/lib/libLLVMARMAsmPrinter.a
  /usr/local/lib/libLLVMARMCodeGen.a
  /usr/local/lib/libLLVMARMDesc.a
  /usr/local/lib/libLLVMARMDisassembler.a
  /usr/local/lib/libLLVMARMInfo.a
  /usr/local/lib/libLLVMAnalysis.a
  /usr/local/lib/libLLVMAsmParser.a
  /usr/local/lib/libLLVMAsmPrinter.a
  /usr/local/lib/libLLVMBPFAsmPrinter.a
  /usr/local/lib/libLLVMBPFCodeGen.a
  /usr/local/lib/libLLVMBPFDesc.a
  /usr/local/lib/libLLVMBPFDisassembler.a
  /usr/local/lib/libLLVMBPFInfo.a
  /usr/local/lib/libLLVMBitReader.a
  /usr/local/lib/libLLVMBitWriter.a
  /usr/local/lib/libLLVMCodeGen.a
  /usr/local/lib/libLLVMCore.a
  /usr/local/lib/libLLVMCoroutines.a
  /usr/local/lib/libLLVMCoverage.a
  /usr/local/lib/libLLVMDebugInfoCodeView.a
  /usr/local/lib/libLLVMDebugInfoDWARF.a
  /usr/local/lib/libLLVMDebugInfoMSF.a
  /usr/local/lib/libLLVMDebugInfoPDB.a
  /usr/local/lib/libLLVMDemangle.a
  /usr/local/lib/libLLVMExecutionEngine.a
  /usr/local/lib/libLLVMGlobalISel.a
  /usr/local/lib/libLLVMHexagonAsmParser.a
  /usr/local/lib/libLLVMHexagonCodeGen.a
  /usr/local/lib/libLLVMHexagonDesc.a
  /usr/local/lib/libLLVMHexagonDisassembler.a
  /usr/local/lib/libLLVMHexagonInfo.a
  /usr/local/lib/libLLVMIRReader.a
  /usr/local/lib/libLLVMInstCombine.a
  /usr/local/lib/libLLVMInstrumentation.a
  /usr/local/lib/libLLVMInterpreter.a
  /usr/local/lib/libLLVMLTO.a
  /usr/local/lib/libLLVMLanaiAsmParser.a
  /usr/local/lib/libLLVMLanaiCodeGen.a
  /usr/local/lib/libLLVMLanaiDesc.a
  /usr/local/lib/libLLVMLanaiDisassembler.a
  /usr/local/lib/libLLVMLanaiInfo.a
  /usr/local/lib/libLLVMLanaiInstPrinter.a
  /usr/local/lib/libLLVMLibDriver.a
  /usr/local/lib/libLLVMLineEditor.a
  /usr/local/lib/libLLVMLinker.a
  /usr/local/lib/libLLVMMC.a
  /usr/local/lib/libLLVMMCDisassembler.a
  /usr/local/lib/libLLVMMCJIT.a
  /usr/local/lib/libLLVMMCParser.a
  /usr/local/lib/libLLVMMIRParser.a
  /usr/local/lib/libLLVMMSP430AsmPrinter.a
  /usr/local/lib/libLLVMMSP430CodeGen.a
  /usr/local/lib/libLLVMMSP430Desc.a
  /usr/local/lib/libLLVMMSP430Info.a
  /usr/local/lib/libLLVMMipsAsmParser.a
  /usr/local/lib/libLLVMMipsAsmPrinter.a
  /usr/local/lib/libLLVMMipsCodeGen.a
  /usr/local/lib/libLLVMMipsDesc.a
  /usr/local/lib/libLLVMMipsDisassembler.a
  /usr/local/lib/libLLVMMipsInfo.a
  /usr/local/lib/libLLVMNVPTXAsmPrinter.a
  /usr/local/lib/libLLVMNVPTXCodeGen.a
  /usr/local/lib/libLLVMNVPTXDesc.a
  /usr/local/lib/libLLVMNVPTXInfo.a
  /usr/local/lib/libLLVMObjCARCOpts.a
  /usr/local/lib/libLLVMObject.a
  /usr/local/lib/libLLVMObjectYAML.a
  /usr/local/lib/libLLVMOption.a
  /usr/local/lib/libLLVMOrcJIT.a
  /usr/local/lib/libLLVMPasses.a
  /usr/local/lib/libLLVMPowerPCAsmParser.a
  /usr/local/lib/libLLVMPowerPCAsmPrinter.a
  /usr/local/lib/libLLVMPowerPCCodeGen.a
  /usr/local/lib/libLLVMPowerPCDesc.a
  /usr/local/lib/libLLVMPowerPCDisassembler.a
  /usr/local/lib/libLLVMPowerPCInfo.a
  /usr/local/lib/libLLVMProfileData.a
  /usr/local/lib/libLLVMRISCVCodeGen.a
  /usr/local/lib/libLLVMRISCVDesc.a
  /usr/local/lib/libLLVMRISCVInfo.a
  /usr/local/lib/libLLVMRuntimeDyld.a
  /usr/local/lib/libLLVMScalarOpts.a
  /usr/local/lib/libLLVMSelectionDAG.a
  /usr/local/lib/libLLVMSparcAsmParser.a
  /usr/local/lib/libLLVMSparcAsmPrinter.a
  /usr/local/lib/libLLVMSparcCodeGen.a
  /usr/local/lib/libLLVMSparcDesc.a
  /usr/local/lib/libLLVMSparcDisassembler.a
  /usr/local/lib/libLLVMSparcInfo.a
  /usr/local/lib/libLLVMSupport.a
  /usr/local/lib/libLLVMSymbolize.a
  /usr/local/lib/libLLVMSystemZAsmParser.a
  /usr/local/lib/libLLVMSystemZAsmPrinter.a
  /usr/local/lib/libLLVMSystemZCodeGen.a
  /usr/local/lib/libLLVMSystemZDesc.a
  /usr/local/lib/libLLVMSystemZDisassembler.a
  /usr/local/lib/libLLVMSystemZInfo.a
  /usr/local/lib/libLLVMTableGen.a
  /usr/local/lib/libLLVMTarget.a
  /usr/local/lib/libLLVMTransformUtils.a
  /usr/local/lib/libLLVMVectorize.a
  /usr/local/lib/libLLVMX86AsmParser.a
  /usr/local/lib/libLLVMX86AsmPrinter.a
  /usr/local/lib/libLLVMX86CodeGen.a
  /usr/local/lib/libLLVMX86Desc.a
  /usr/local/lib/libLLVMX86Disassembler.a
  /usr/local/lib/libLLVMX86Info.a
  /usr/local/lib/libLLVMX86Utils.a
  /usr/local/lib/libLLVMXCoreAsmPrinter.a
  /usr/local/lib/libLLVMXCoreCodeGen.a
  /usr/local/lib/libLLVMXCoreDesc.a
  /usr/local/lib/libLLVMXCoreDisassembler.a
  /usr/local/lib/libLLVMXCoreInfo.a
  /usr/local/lib/libLLVMXRay.a
  /usr/local/lib/libLLVMipo.a
  /usr/local/lib/libasprintf.a
  /usr/local/lib/libgettextpo.a
  /usr/local/lib/libintl.a
  /usr/local/lib/libopenjp2.a
  /usr/local/lib/libqhull.a

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jonchang commented Sep 24, 2018

@bbercovici thanks for reporting this. We shim clang in order to use our superenv build environment which helps keeps builds clean. Can you try to install it again but run brew gist-logs formula and respond with the link?

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jonchang commented Sep 24, 2018

Also, my understanding was that although the latest clang does support openmp, Apple clang does not ship with openmp and using libomp is needed instead. I notice that you have libomp installed but it is not listed as a dependency of your formula. Does anything change if you use depends_on "libomp and follow the Caveats listed when you say brew info libomp?

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bbercovici commented Sep 24, 2018

Here's the gist link:
https://gist.github.com/412019cda33d2b6a964be7bfe05c87b0

Also your understanding was right. Removing the libomp.dylib and trying to build the formula from source fails at the cmake stage as OpenMP can't be found. Adding the recommended CMake flags from brew info libomp did the trick ! There's just an error message that was thrown by brew install libomp since it could not create a symlink to /usr/local/include/omp.h which already existed. I did not force this symlink to be created but neither cmake nor the compiler complained upon installing sharmlib. Thanks !

@bbercovici bbercovici closed this Sep 24, 2018

@lock lock bot added the outdated label Oct 24, 2018

@lock lock bot locked as resolved and limited conversation to collaborators Oct 24, 2018

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