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Install R failed on 10.8.5 #587

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cwchentw opened this Issue Jan 3, 2014 · 2 comments

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cwchentw commented Jan 3, 2014

failed even build with brew install homebrew/science/r -v -env=std

$ brew doctor
Your system is ready to brew.

$ brew update
Already up-to-date.

==> Formula
Tap: homebrew/science
Path: /usr/local/Library/Taps/homebrew-science/r.rb
==> Configuration
HOMEBREW_VERSION: 0.9.5
HEAD: ba5facc
CPU: quad-core 64-bit ivybridge
OS X: 10.8.5-x86_64
Xcode: 5.0.2
CLT: 5.0.1.0.1.1377666378
X11: 2.7.5 => /opt/X11
=> ENV
CC: /usr/bin/clang
CXX: /usr/bin/clang++ => /usr/bin/clang
OBJC: /usr/bin/clang
OBJCXX: /usr/bin/clang++
CFLAGS: -Os -w -pipe -march=native -mmacosx-version-min=10.8
CXXFLAGS: -Os -w -pipe -march=native -mmacosx-version-min=10.8
CPPFLAGS: -I/usr/local/opt/readline/include -F/usr/local/Frameworks -I/opt/X11/include -I/opt/X11/include/freetype2
LDFLAGS: -L/usr/local/opt/readline/lib -L/usr/local/lib -F/usr/local/Frameworks -Wl,-headerpad_max_install_names -L/opt/X11/lib
MAKEFLAGS: -j4
CMAKE_PREFIX_PATH: /usr/local/opt/readline:/opt/X11
CMAKE_INCLUDE_PATH: /opt/X11/include:/opt/X11/include/freetype2
CMAKE_FRAMEWORK_PATH: /usr/local/Frameworks
MACOSX_DEPLOYMENT_TARGET: 10.8
PKG_CONFIG_LIBDIR: /usr/local/lib/pkgconfig:/usr/local/Library/ENV/pkgconfig/10.8:/usr/lib/pkgconfig:/opt/X11/lib/pkgconfig:/opt/X11/share/pkgconfig
ACLOCAL_PATH: /opt/X11/share/aclocal
PATH: /Users/apple/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/usr/local/Library/Contributions/cmd:/opt/X11/bin
CPATH: /usr/local/include

Error Message:
begin installing recommended package MASS
begin installing recommended package survival
begin installing recommended package lattice
begin installing recommended package codetools
/private/tmp/r-7tJL/R-3.0.2/bin/INSTALL: line 34: 32639 Done echo 'tools:::.install_packages()'
32643 Abort trap: 6 | R_DEFAULT_PACKAGES= LC_COLLATE=C "${R_HOME}/bin/R" $myArgs --slave --args ${args}
make[2]: *** [codetools.ts] Error 1
make[2]: *** Waiting for unfinished jobs....
/private/tmp/r-7tJL/R-3.0.2/bin/INSTALL: line 34: 32640 Done echo 'tools:::.install_packages()'
32642 Abort trap: 6 | R_DEFAULT_PACKAGES= LC_COLLATE=C "${R_HOME}/bin/R" $myArgs --slave --args ${args}
make[2]: *** [survival.ts] Error 1
/private/tmp/r-7tJL/R-3.0.2/bin/INSTALL: line 34: 32638 Done echo 'tools:::.install_packages()'
32644 Abort trap: 6 | R_DEFAULT_PACKAGES= LC_COLLATE=C "${R_HOME}/bin/R" $myArgs --slave --args ${args}
make[2]: *** [lattice.ts] Error 1
/private/tmp/r-7tJL/R-3.0.2/bin/INSTALL: line 34: 32637 Done echo 'tools:::.install_packages()'
32641 Abort trap: 6 | R_DEFAULT_PACKAGES= LC_COLLATE=C "${R_HOME}/bin/R" $myArgs --slave --args ${args}
make[2]: *** [MASS.ts] Error 1
make[1]: *** [recommended-packages] Error 2
make: *** [stamp-recommended] Error 2

@ghost ghost assigned dpo Jan 3, 2014

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dpo Jan 8, 2014

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Could you please gist the full logs?

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dpo commented Jan 8, 2014

Could you please gist the full logs?

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cwchentw commented Jan 8, 2014

I post the install log on a gist
https://gist.github.com/cwchen123/8312133

@dpo dpo referenced this issue Jan 8, 2014

Closed

R depends on cairo? #593

christianurich added a commit to christianurich/homebrew-science that referenced this issue Jan 10, 2014

r: added cairo dependency
see #587 and #593. R failed to build because of missing cairo dependency.

@dpo dpo closed this in 37ca45f Jan 12, 2014

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