FastTree, Glimmer3, tRNAscan-SE #57

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Commits on Jan 7, 2013
  1. @bosborne

    FastTree infers approximately-maximum-likelihood phylogenetic trees f…

    bosborne committed Jan 7, 2013
    …rom alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.
Commits on Jan 9, 2013
  1. @bosborne
  2. @bosborne

    Correct test, incomplete path

    bosborne committed Jan 9, 2013
Commits on Jan 10, 2013
  1. @bosborne
  2. @bosborne
  3. @bosborne

    Fix 'audit' errors

    bosborne committed Jan 10, 2013
  4. @bosborne

    Fix 'audit' errors

    bosborne committed Jan 10, 2013
  5. @bosborne

    Glimmer is a system for finding genes in microbial DNA, especially th…

    bosborne committed Jan 10, 2013
    …e genomes of bacteria, archaea, and viruses. With test.
  6. @bosborne

    Pass audit

    bosborne committed Jan 10, 2013
  7. @bosborne
  8. @bosborne

    Add a test

    bosborne committed Jan 10, 2013
  9. @bosborne

    Simplify a bit

    bosborne committed Jan 10, 2013
  10. @bosborne
  11. @bosborne

    Simplify a bit

    bosborne committed Jan 10, 2013
  12. @bosborne

    Simplify code a bit

    bosborne committed Jan 10, 2013
Commits on Jan 12, 2013
  1. @bosborne

    Suggested changes

    bosborne committed Jan 12, 2013
Commits on Jan 13, 2013
  1. @bosborne

    Rename

    bosborne committed Jan 13, 2013
  2. @bosborne

    Correct locations for 'test'

    bosborne committed Jan 13, 2013
  3. @bosborne

    Remove quotes on true and false

    bosborne committed Jan 13, 2013
Commits on Jan 15, 2013
  1. @bosborne
  2. @bosborne
  3. @bosborne

    Use mktemp()

    bosborne committed Jan 15, 2013
  4. @bosborne

    Copy all fasta files

    bosborne committed Jan 15, 2013