🔬 Scientific formulae for the Homebrew package manager
Ruby
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.github documentation: update to new documentation links (#4816) Jan 8, 2017
Aliases ampl-mp: rename from asl Nov 3, 2016
Requirements Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
.travis.yml travis.yml: fulfill perl XML::Parser dependency (#5129) Feb 13, 2017
LICENSE LICENSE added Jan 1, 2016
README.md documentation: update to new documentation links (#4816) Jan 8, 2017
a5.rb a5: update 20160825 bottle for Linuxbrew. Feb 1, 2017
abacas.rb abacas: Add doi and bottle :unneeded and fix test Jun 13, 2016
abinit.rb abinit: update 8.0.8b_1 bottle. Feb 6, 2017
abyss-explorer.rb abyss-explorer: update 1.3.4_1 bottle for Linuxbrew. Oct 25, 2016
abyss.rb abyss: update 2.0.2 bottle for Linuxbrew. Oct 29, 2016
ace-corrector.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
adam.rb adam: Add tag bioinformatics Jan 10, 2017
adapterremoval.rb adapterremoval: add 2.2.0 bottle. Feb 1, 2017
adol-c.rb adol-c: update 2.6.2 bottle. Oct 10, 2016
afra.rb afra: update 2 bottle for Linuxbrew. Oct 30, 2016
alembic.rb alembic: update 1.7.0_1 bottle. Feb 5, 2017
alglib.rb alglib: add 3.10.0 bottle. Nov 16, 2016
allpaths-lg.rb allpaths-lg: add 52488 bottle for Linuxbrew. Jul 1, 2016
alpscore.rb alpscore: update 1.0.0 bottle. Feb 17, 2017
amos.rb amos: remove qt4 support. Dec 12, 2016
ampl-mp.rb ampl-mp: update 3.1.0 bottle. Nov 3, 2016
analysis.rb analysis: update 0.8.8_1 bottle for Linuxbrew. Oct 30, 2016
andi.rb andi: update 0.10_1 bottle for Linuxbrew. Oct 29, 2016
ann.rb ann: update 1.1.2 bottle. Oct 24, 2016
anvio.rb anvio: update 2.1.0_1 bottle. Feb 6, 2017
apophenia.rb apophenia: update 1.0_1 bottle. Oct 24, 2016
aragorn.rb aragorn: update 1.2.36 bottle for Linuxbrew. Oct 25, 2016
arb.rb arb: update 2.9.0 bottle for Linuxbrew. Feb 16, 2017
arcs.rb arcs: add 1.0.0 bottle for Linuxbrew. Dec 14, 2016
aribas.rb aribas: add desc Aug 30, 2016
armadillo.rb armadillo: update 7.700.0_1 bottle for Linuxbrew. Feb 14, 2017
arow++.rb massive audit fix Dec 1, 2015
arpack.rb arpack: update 3.4.0 bottle for Linuxbrew. Feb 13, 2017
arrayfire.rb arrayfire: update 3.3.2_1 bottle. Jan 5, 2017
art.rb art: update 20160605 bottle for Linuxbrew. Jan 16, 2017
artemis.rb artemis: update 16.0.11 bottle for Linuxbrew. Jun 3, 2016
ascii_plots.rb remove root_url in bottle block Jul 24, 2015
astral.rb astral 4.10.7 Jul 29, 2016
astrometry-net.rb astrometry-net: update 0.70 bottle for Linuxbrew. Feb 7, 2017
ate-pairing.rb massive audit fix Dec 1, 2015
atomic-pseudopotential-engine.rb atomic-pseudopotential-engine: update 2.2.1_3 bottle. Sep 1, 2016
atompaw.rb atompaw: update 4.0.0.13_1 bottle. Aug 3, 2016
atpdec.rb massive audit fix Dec 1, 2015
atram.rb atram: update 1.04_2 bottle for Linuxbrew. Jul 30, 2016
augustus.rb augustus: update 3.2.2_2 bottle. Feb 17, 2017
bact.rb bact: audit fix, add test do (#4066) Aug 15, 2016
bali-phy.rb bali-phy: audit fix Aug 15, 2016
bam-readcount.rb bam-readcount: update 0.8.0 bottle for Linuxbrew. Oct 23, 2016
bamhash.rb bamhash: add desc Aug 15, 2016
bamm.rb bamm: add 2.5.0 bottle for Linuxbrew. Feb 15, 2017
bamtools.rb bamtools: update 2.4.1 bottle for Linuxbrew. Feb 24, 2017
bamutil.rb Don't call deprecated ENV.j1 Feb 5, 2017
barrnap.rb barrnap: update 0.8 bottle for Linuxbrew. Feb 19, 2017
bbtools.rb bbtools: update 36.71 bottle for Linuxbrew. Dec 16, 2016
bcalm.rb bcalm: update 2.0.0 bottle for Linuxbrew. Jul 1, 2016
bcftools.rb bcftools: update 1.3.1 bottle for Linuxbrew. Jun 30, 2016
beagle.rb beagle: update 2.1.2 bottle for Linuxbrew. Jul 1, 2016
beast.rb beast: update 1.8.4 bottle for Linuxbrew. Oct 8, 2016
beast2.rb beast2: update 2.4.5 bottle for Linuxbrew. Feb 2, 2017
bedops.rb bedops: update 2.4.25 bottle for Linuxbrew. Feb 16, 2017
bedtools.rb bedtools: update 2.26.0 bottle for Linuxbrew. Aug 2, 2016
beetl.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
bfc.rb bfc: update 181 bottle for Linuxbrew. Jun 2, 2016
bioawk.rb bioawk: update 1.0 bottle for Linuxbrew. Jun 3, 2016
biobloomtools.rb biobloomtools: update 2.0.13_1 bottle for Linuxbrew. Dec 31, 2016
biocgal.rb biocgal: add desc Aug 15, 2016
biointerchange.rb biointerchange: Add bottle :unneeded and fix style Jun 13, 2016
biomake.rb biomake: update 0.1.1 bottle for Linuxbrew. Feb 12, 2017
biopieces.rb biopieces 2.0 Dec 27, 2016
biopp.rb biopp: remove qt option cruft. Dec 12, 2016
bitseq.rb bitseq: shorten desc to pass audit Aug 15, 2016
blasr.rb blasr: update 2.2 bottle for Linuxbrew. Jun 8, 2016
blast.rb blast: update 2.6.0 bottle for Linuxbrew. Feb 14, 2017
blat.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
blaze-lib.rb blaze-lib: update 2.4_1 bottle. Aug 3, 2016
bless.rb bless: update 0.24_2 bottle. Aug 25, 2016
blis.rb blis: update 0.2.1 bottle. Oct 6, 2016
boost-compute.rb boost-compute: update 1.63.0 bottle. Jan 3, 2017
bowtie.rb bowtie: update 1.2.0 bottle for Linuxbrew. Feb 19, 2017
bowtie2.rb bowtie2: update 2.3.0 bottle for Linuxbrew. Feb 18, 2017
bpel2owfn.rb bpel2owfn: audit fixes Aug 15, 2016
bpipe.rb bpipe: update 0.9.9.2 bottle for Linuxbrew. Oct 29, 2016
breseq.rb breseq: update 0.28.1.Source bottle for Linuxbrew. Oct 30, 2016
busco.rb busco: update URL (#4963) Jan 31, 2017
butterflow.rb butterflow: update 0.2.2 bottle. Feb 1, 2017
bwa.rb bwa: update 0.7.15 bottle for Linuxbrew. Jul 28, 2016
bwtdisk.rb bwtdisk: add desc Aug 15, 2016
calculix-ccx.rb calculix-ccx: update 2.11_2 bottle for Linuxbrew. Jan 4, 2017
cantera.rb cantera: add tag and DOI Jan 26, 2017
canu.rb canu: update 1.4 bottle for Linuxbrew. Dec 15, 2016
cap3.rb cap3: update 2015-02-11 bottle for Linuxbrew. Jun 3, 2016
ccfits.rb massive audit fix Dec 1, 2015
cd-hit.rb cd-hit: update 4.6.6 bottle for Linuxbrew. Oct 30, 2016
cddlib.rb cddlib: update 094h bottle for Linuxbrew. Feb 1, 2017
cdo.rb cdo: update 1.7.2 bottle for Linuxbrew. Feb 21, 2017
cdsclient.rb cdsclient: update 3.83 bottle. Apr 11, 2016
cegma.rb cegma: update 2.5 bottle. May 26, 2016
celera-assembler.rb celera-assembler: update 8.3rc1 bottle for Linuxbrew. Jul 11, 2016
centrifuge.rb centrifuge: add 1.0.3-beta bottle. Feb 1, 2017
ceres-solver.rb ceres-solver: update 1.12.0_3 bottle. Feb 12, 2017
cerulean.rb cerulean: add 0.1 bottle for Linuxbrew. Jul 11, 2016
cfitsio.rb cfitsio: update 3.390 bottle. Oct 19, 2016
cgns.rb cgns: update 3.3.0_2 bottle for Linuxbrew. Feb 5, 2017
circlator.rb circlator: update 1.4.1 bottle for Linuxbrew. Jan 27, 2017
circle.yml circle.yml: Install matplotlib, numpy, and scipy Feb 23, 2017
circos.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
ckon.rb ckon: update 0.7.1_2 bottle. Aug 3, 2016
clark.rb clark: update 1.2.3 bottle for Linuxbrew. Dec 12, 2016
clblas.rb clblas: update 2.6 bottle. Feb 19, 2016
clfft.rb clfft: update 2.12.1 bottle. Jul 31, 2016
clinfo.rb clinfo: update 2.1.17.02.09 bottle. Feb 11, 2017
clonalframeml.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
clonehd.rb clonehd: update 1.17.9 bottle for Linuxbrew. Oct 29, 2016
clustal-omega.rb clustal-omega: update 1.2.1 bottle for Linuxbrew. Jun 3, 2016
clustal-w.rb clustal-w: update 2.1 bottle for Linuxbrew. Jun 3, 2016
cmdstan.rb cmdstan: update 2.14.0 bottle. Dec 27, 2016
cminpack.rb cminpack: update 1.3.6 bottle. Feb 25, 2017
cmor.rb cmor: update 3.2.1_2 bottle. Feb 5, 2017
coinmp.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
colpack.rb colpack: update 1.0.10 bottle. Oct 13, 2016
concorde.rb concorde: add 031219 bottle. Jul 25, 2016
corset.rb corset: update 1.05 bottle. May 16, 2016
cp2k.rb cp2k: add head, tag, and DOI Jan 26, 2017
cppad.rb cppad: update 20150000_3 bottle. Jan 23, 2017
crfsuite.rb massive audit fix Dec 1, 2015
crlibm.rb massive audit fix Dec 1, 2015
cryptoverif.rb cryptoverif: update 1.22 bottle. Jan 21, 2016
cuba.rb massive audit fix Dec 1, 2015
cube.rb cube: update 4.3.4 bottle. Nov 11, 2016
cufflinks.rb cufflinks: rename boost@1.55 dependency (#5150) Feb 16, 2017
cusp.rb cusp 0.4.0 (new formula). Oct 23, 2016
cvblob.rb cvblob: add 0.10.4 bottle. Sep 4, 2016
cytoscape.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
dadadodo.rb massive audit fix Dec 1, 2015
daligner.rb daligner: update 1.0 bottle for Linuxbrew. Jun 3, 2016
data-science-toolbox.rb massive audit fix Dec 1, 2015
datamash.rb datamash: update 1.1.1 bottle for Linuxbrew. Jan 21, 2017
dazz_db.rb dazz_db: update 1.0 bottle for Linuxbrew. Jun 3, 2016
dealii.rb dealii: update 8.4.2_8 bottle. Feb 12, 2017
deeplearning4j-cli.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
delly.rb delly: update 0.7.6 bottle for Linuxbrew. Oct 23, 2016
des.rb des: update 4.2 bottle for Linuxbrew. Feb 16, 2017
dextractor.rb dextractor: update 1.0_3 bottle for Linuxbrew. Feb 5, 2017
dgtal.rb dgtal: update 0.9.3 bottle for Linuxbrew. Feb 12, 2017
diamond.rb diamond: update 0.8.36 bottle for Linuxbrew. Feb 7, 2017
dida.rb dida: update 1.0.1_1 bottle for Linuxbrew. Oct 29, 2016
discovar.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
discovardenovo.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
dl_poly_classic.rb dl_poly_classic: add tag and DOI Jan 26, 2017
dlib.rb dlib: update 19.2 bottle. Nov 22, 2016
dotwrp.rb massive audit fix Dec 1, 2015
ds9.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
dsdp.rb dsdp: add 5.8 bottle. May 17, 2016
dsk.rb dsk: update 2.1.0 bottle for Linuxbrew. Jun 21, 2016
dssp.rb dssp: update 2.2.1_2 bottle. Aug 3, 2016
dwgsim.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
dynare.rb dynare: update 4.4.3_5 bottle. Feb 12, 2017
e-mem.rb e-mem: add 1.0.0 bottle for Linuxbrew. Nov 22, 2016
ea-utils.rb ea-utils: update 1.1.2-806_1 bottle. Sep 1, 2016
edena.rb massive audit fix Dec 1, 2015
edirect.rb edirect: update 6.00.20170109 bottle for Linuxbrew. Jan 18, 2017
einspline.rb einspline: update 0.9.2 bottle. Jun 27, 2016
elemental.rb elemental: update 0.85_1 bottle. Oct 10, 2016
elph.rb elph: add 1.0.1 bottle. Oct 14, 2016
emboss.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
enblend-enfuse.rb enblend-enfuse: update 4.1.1_4 bottle. Feb 6, 2017
ensembl-tools.rb massive audit fix Dec 1, 2015
ess.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
etsf_io.rb etsf_io: update 1.0.4_4 bottle for Linuxbrew. Feb 6, 2017
exabayes.rb exabayes: update 1.5 bottle. Sep 26, 2016
exonerate.rb exonerate: update 2.2.0 bottle for Linuxbrew. Jun 3, 2016
express.rb express: revision for protobuf Sep 10, 2016
fann.rb massive audit fix Dec 1, 2015
fasta.rb fasta: update 36.3.7 bottle for Linuxbrew. Jun 3, 2016
fastml.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
fastq-tools.rb fastq-tools: Depends on pcre Jun 3, 2016
fastqc.rb fastqc: update 0.11.5 bottle for Linuxbrew. Aug 2, 2016
fasttree.rb fasttree: update 2.1.8 bottle for Linuxbrew. Jun 3, 2016
fastuniq.rb fastuniq: update 1.1 bottle for Linuxbrew. Jun 3, 2016
fastx_toolkit.rb fastx_toolkit: add 0.0.14 bottle for Linuxbrew. Oct 16, 2016
fcgene.rb massive audit fix Dec 1, 2015
fermi-lite.rb fermi-lite: update 0.1 bottle for Linuxbrew. Oct 29, 2016
fermi.rb fermi: update 1.1 bottle for Linuxbrew. Jun 3, 2016
fermi2.rb fermi2: update 0.1 bottle for Linuxbrew. Jun 3, 2016
fermikit.rb fermikit: update 0.13 bottle for Linuxbrew. Jun 3, 2016
fgsl.rb fgsl: update 1.2.0 bottle for Linuxbrew. Jan 31, 2017
field3d.rb field3d: update 1.6.1_6 bottle. Feb 5, 2017
flann.rb flann: update 1.9.1_3 bottle for Linuxbrew. Feb 5, 2017
flash.rb flash: update 1.2.11 bottle for Linuxbrew. Jun 3, 2016
flint.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
flux-simulator.rb remove root_url in bottle block Jul 24, 2015
formula_renames.json ampl-mp: rename from asl Nov 3, 2016
fplll.rb fplll: update 5.0.3 bottle. Oct 19, 2016
fqzcomp.rb fqzcomp: update 4.6 bottle for Linuxbrew. Jun 3, 2016
freebayes.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
freec.rb freec: update 10.4 bottle for Linuxbrew. Feb 4, 2017
fsa.rb fsa: update 1.15.9 bottle for Linuxbrew. Jun 3, 2016
fwdpp.rb fwdpp: update 0.5.4 bottle for Linuxbrew. Dec 15, 2016
g2o.rb g2o: update 2016-04-24_2 bottle. Feb 12, 2017
gaemr.rb massive audit fix Dec 1, 2015
galfit.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
galib.rb massive audit fix Dec 1, 2015
galsim.rb galsim: fix openmp option, audits Oct 11, 2016
gap.rb gap: update 4.8.6 bottle. Nov 21, 2016
garli.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
gatb.rb gatb: update 1.1.0 bottle for Linuxbrew. Jun 21, 2016
gatk.rb gatk 3.6 (new formula) Oct 13, 2016
gdcm.rb gdcm: update 2.6.6 bottle. Oct 30, 2016
geant4.rb geant4: update 10.3.0 bottle for Linuxbrew. Dec 31, 2016
geda-gaf.rb geda-gaf: update 1.8.2_1 bottle. Feb 10, 2016
geneid.rb geneid: update 1.4.4 bottle for Linuxbrew. Jun 3, 2016
genet.rb massive audit fix Dec 1, 2015
genewise.rb genewise: update 2.4.1_1 bottle. May 23, 2016
genometools.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
getdp.rb getdp: update 2.11.0_3 bottle. Feb 12, 2017
gfan.rb gfan: use gcc@5 (#4901) Feb 1, 2017
ggobi.rb ggobi: update 2.1.11 bottle. Feb 10, 2016
giira.rb giira 01.3 Mar 25, 2015
gingr.rb gingr: update 1.2 bottle for Linuxbrew. Jun 3, 2016
glimmer3.rb massive audit fix Dec 1, 2015
glimmerhmm.rb glimmerhmm: update 3.0.2 bottle for Linuxbrew. Jun 3, 2016
glpk.rb glpk: update 4.61 bottle for Linuxbrew. Jan 27, 2017
glpk448.rb glpk448: use :DATA instead of DATA May 13, 2016
gmap-gsnap.rb gmap-gsnap: update 2017-01-14 bottle. Feb 11, 2017
gmcloser.rb remove root_url in bottle block Jul 24, 2015
gmsh.rb gmsh: update 2.16.0 bottle for Linuxbrew. Jan 19, 2017
gmt.rb gmt: update 5.3.1_3 bottle for Linuxbrew. Feb 5, 2017
gmt4.rb gmt4: update 4.5.15_3 bottle. Feb 5, 2017
gmtk.rb gmtk: Change dep homebrew/science/hdf5 to hdf5 Dec 13, 2016
gnudatalanguage.rb gnudatalanguage: update 0.9.7_1 bottle for Linuxbrew. Feb 7, 2017
grabix.rb grabix: update 0.1.6 bottle for Linuxbrew. Jun 3, 2016
graph-tool.rb graph-tool: update 2.20 bottle. Jan 30, 2017
graphlan.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
gromacs.rb gromacs: add tag and DOI Jan 26, 2017
gtsam.rb gtsam: update 3.2.1_3 bottle. Feb 16, 2017
gubbins.rb gubbins: fix old homebrew/python dependencies. Jan 25, 2017
h5utils.rb h5utils: update 1.12.1_5 bottle for Linuxbrew. Feb 5, 2017
harry.rb harry: update 0.4.2 bottle. Oct 13, 2016
harvest-tools.rb harvest-tools: update 1.2_1 bottle. Sep 10, 2016
hdf5.rb hdf5: add --without-hl option Feb 14, 2017
hdf5@1.8.rb hdf5@1.8: add 1.8.18 bottle for Linuxbrew. Feb 6, 2017
healpix.rb healpix: update 3.31 bottle for Linuxbrew. Feb 13, 2017
hisat.rb hisat: update 0.1.6b bottle for Linuxbrew. Jun 3, 2016
hisat2.rb hisat2: update 2.0.5 bottle for Linuxbrew. Feb 16, 2017
hlaminer.rb hlaminer: update 1.3.1 bottle for Linuxbrew. Dec 13, 2016
hmmer.rb hmmer: update 3.1b2_1 bottle for Linuxbrew. Jun 3, 2016
hmmer2.rb hmmer2: update 2.3.2 bottle for Linuxbrew. Jun 3, 2016
hopdm.rb hopdm: update 2.13_3 bottle. Aug 3, 2016
hotspot.rb hotspot: update 4.1.0_1 bottle. Oct 23, 2016
htsbox.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
htslib.rb htslib: update 1.3.2 bottle for Linuxbrew. Feb 12, 2017
humann2.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
hwloc.rb hwloc: update 1.11.6 bottle. Feb 24, 2017
hyphy.rb hyphy: update 2.2.7 bottle. Sep 20, 2016
hypre.rb hypre: update 2.11.1 bottle for Linuxbrew. Jan 21, 2017
idba.rb idba: update 1.1.3 bottle for Linuxbrew. Oct 14, 2016
idcoefs.rb massive audit fix Dec 1, 2015
igraph.rb igraph: update 0.7.1_3 bottle for Linuxbrew. Jun 4, 2016
igv.rb igv 2.3.91 (#5089) Feb 8, 2017
igvtools.rb igvtools 2.3.91 (#5090) Feb 8, 2017
impute2.rb impute2: Fix audit Dec 27, 2016
infernal.rb infernal: update 1.1.2 bottle for Linuxbrew. Nov 30, 2016
insighttoolkit.rb insighttoolkit: Fix for test under Linux Feb 7, 2017
inter-views.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
ipopt.rb ipopt: update 3.12.5_1 bottle. Nov 3, 2016
iqtree.rb iqtree 1.4.3 (new formula) Aug 25, 2016
itensor.rb itensor: fix audit Sep 20, 2016
itsol.rb massive audit fix Dec 1, 2015
iva.rb iva: update 1.0.8 bottle. Feb 14, 2017
jblas.rb massive audit fix Dec 1, 2015
jellyfish-1.1.rb jellyfish-1.1: update 1.1.11 bottle for Linuxbrew. Oct 29, 2016
jellyfish.rb jellyfish: update 2.2.6 bottle for Linuxbrew. Feb 13, 2017
jmol.rb massive audit fix Dec 1, 2015
joinx.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
jsbsim.rb jsbsim: update 1.0.rc2_1 bottle. Aug 31, 2016
k8.rb k8: add 0.2.2 bottle. Apr 26, 2016
kaiju.rb kaiju: update 1.4.2 bottle for Linuxbrew. Oct 30, 2016
kalign.rb massive audit fix Dec 1, 2015
kallisto.rb kallisto: update 0.43.0_3 bottle for Linuxbrew. Feb 5, 2017
kat.rb kat: update 2.3.1 bottle for Linuxbrew. Feb 23, 2017
kent-tools.rb kent-tools: update 339 bottle for Linuxbrew. Oct 31, 2016
kissplice.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
kmacs.rb kmacs: update 20140605 bottle for Linuxbrew. Oct 29, 2016
kmc.rb kmc: update 2.3 bottle. Dec 21, 2015
kmergenie.rb kmergenie: update 1.6976_1 bottle for Linuxbrew. Jul 10, 2016
kmerstream.rb kmerstream: depend on scipy Feb 13, 2017
kollector.rb kollector: add 1.0 bottle for Linuxbrew. Dec 28, 2016
kraken.rb remove root_url in bottle block Jul 24, 2015
lammps.rb lammps: add tag and DOI Jan 26, 2017
lapack-manpages.rb massive audit fix Dec 1, 2015
last.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
lastz.rb massive audit fix Dec 1, 2015
libbi.rb libbi: fix bintray rebuild Feb 8, 2017
libbigwig.rb libbigwig: add 0.3.0 bottle for Linuxbrew. Feb 22, 2017
libbuddy.rb libbuddy: add 2.4 bottle. Aug 16, 2016
libccd.rb libccd: update 2.0_1 bottle. Feb 21, 2016
libcerf.rb libcerf: update 1.5 bottle for Linuxbrew. Feb 1, 2017
libctl.rb massive audit fix Dec 1, 2015
libdivsufsort.rb remove root_url in bottle block Jul 24, 2015
libeemd.rb libeemd: add 1.4 bottle for Linuxbrew. Dec 12, 2016
libfolia.rb libfolia: update 0.13_1 bottle. Nov 29, 2015
libgpkg.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
liblbfgs.rb massive audit fix Dec 1, 2015
libmatio.rb libmatio: update 1.5.10 bottle for Linuxbrew. Feb 15, 2017
libminc.rb libminc: update 2.3.00_3 bottle for Linuxbrew. Feb 5, 2017
libpll.rb remove root_url in bottle block Jul 24, 2015
libsbml.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
libsbol.rb libsbol: update 2.1.1.1 bottle. Feb 4, 2017
libsequence.rb libsequence: update 1.9.0 bottle for Linuxbrew. Feb 8, 2017
libsigrokdecode.rb libsigrokdecode: update 0.4.1 bottle for Linuxbrew. Dec 27, 2016
lie.rb lie: add 2.2.2 bottle. Sep 12, 2016
lighter.rb lighter: update 1.1.1 bottle for Linuxbrew. Oct 29, 2016
lightstringgraph.rb lightstringgraph: add 0.4.0_1 bottle. Oct 15, 2016
links-scaffolder.rb links-scaffolder: add 1.8.4 bottle for Linuxbrew. Dec 15, 2016
lis.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
littler.rb littler: update 0.2.3_7 bottle for Linuxbrew. Feb 6, 2017
lmfit.rb lmfit: update 6.1 bottle for Linuxbrew. Feb 14, 2017
lmod.rb Lmod: 5.9.3 May 6, 2015
lobstr.rb lobstr: update 4.0.6_2 bottle for Linuxbrew. Oct 29, 2016
lola.rb massive audit fix Dec 1, 2015
lp_solve.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
lsd.rb lsd: update 0.3b bottle for Linuxbrew. Oct 30, 2016
lumpy-sv.rb lumpy-sv: update 0.2.11 bottle for Linuxbrew. Jun 3, 2016
macse.rb macse: update 1.2 bottle for Linuxbrew. Oct 29, 2016
mad-x.rb mad-x: update 5.02.13 bottle for Linuxbrew. Jan 5, 2017
madlib.rb madlib: update 1.9.1 bottle for Linuxbrew. Feb 23, 2017
mafft.rb mafft: update 7.305 bottle for Linuxbrew. Oct 5, 2016
maker.rb maker 2.31.9 Jan 6, 2017
mallet.rb mallet: add 2.0.8 bottle for Linuxbrew. Feb 23, 2017
mantaflow.rb mantaflow: add 0.9 bottle for Linuxbrew. Feb 14, 2017
mapsembler2.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
maq.rb maq: update 0.7.1 bottle for Linuxbrew. Jun 4, 2016
mash.rb mash: update 1.1.1_1 bottle. Sep 1, 2016
masurca.rb masurca: update 3.1.3 bottle for Linuxbrew. Dec 27, 2016
mathgl.rb mathgl: update 2.3.5.1_2 bottle. Jan 28, 2017
mathomatic.rb mathomatic: add 16.0.5 bottle. Jul 26, 2016
matplotlib.rb matplotlib: update 2.0.0_1 bottle for Linuxbrew. Feb 21, 2017
maude.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
maxima.rb maxima: update 5.38.1 bottle. Nov 19, 2016
mbsystem.rb mbsystem: update 5.5.2284_3 bottle. Feb 5, 2017
mcl.rb mcl: update 14-137 bottle for Linuxbrew. Jul 30, 2016
med-file.rb med-file: add 3.2.0 bottle for Linuxbrew. Feb 19, 2017
megahit.rb megahit: update 1.1.1 bottle for Linuxbrew. Dec 12, 2016
megam.rb massive audit fix Dec 1, 2015
meme.rb meme: update 4.11.2.2 bottle. Dec 16, 2016
meraculous.rb massive audit fix Dec 1, 2015
metaphlan.rb metaphlan: update 1.7.8 bottle. Mar 11, 2016
methpipe.rb methpipe: update 3.4.2_1 bottle. Sep 1, 2016
metis.rb metis: update 5.1.0 bottle for Linuxbrew. Feb 3, 2017
metis4.rb metis4: update 4.0.3_1 bottle. Oct 13, 2015
mfem.rb mfem: update 3.3 bottle for Linuxbrew. Feb 12, 2017
mfusg.rb mfusg: use pkgshare Aug 3, 2015
mhap.rb mhap: update 2.1.1 bottle for Linuxbrew. Oct 5, 2016
minced.rb minced: build and audit fixes Oct 5, 2016
minia.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
miniasm.rb miniasm: update 0.2 bottle for Linuxbrew. Jun 4, 2016
minimap.rb minimap: update 0.2 bottle for Linuxbrew. Jun 3, 2016
mir-prefer.rb mir-prefer: Add DOI and tag bioinformatics Oct 27, 2016
mira.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
mitofy.rb mitofy: update 20120322 bottle for Linuxbrew. Jul 11, 2016
mlpack.rb mlpack: update 2.1.1_1 bottle. Feb 5, 2017
mlst.rb mlst: update 2.8 bottle. Feb 14, 2017
moab.rb moab: update 4.9.2_3 bottle for Linuxbrew. Feb 5, 2017
molden.rb molden: add tag and DOI Jan 26, 2017
moose.rb moose: update 3.1.0_2 bottle for Linuxbrew. Feb 5, 2017
mothur.rb mothur: update 1.39.0 bottle for Linuxbrew. Jan 28, 2017
mpsolve.rb massive audit fix Dec 1, 2015
mrbayes.rb mrbayes: update 3.2.6 bottle for Linuxbrew. Dec 13, 2016
mrfast.rb remove root_url in bottle block Jul 24, 2015
msieve.rb msieve: add 152 bottle. Nov 7, 2015
mtl.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
multi-worm-tracker.rb multi-worm-tracker: update 1.3.0 bottle for Linuxbrew. Jun 4, 2016
mummer.rb mummer: update 3.23 bottle. Nov 20, 2016
mumps.rb mumps: update 5.0.2 bottle. Nov 9, 2016
muscle.rb muscle: update 3.8.1551 bottle for Linuxbrew. Dec 7, 2016
nanopolish.rb nanopolish: update 0.5.0_1 bottle for Linuxbrew. Feb 5, 2017
nauty.rb nauty: update 26r5 bottle. May 9, 2016
ncbi-c++-toolkit.rb ncbi-c++-toolkit: fix url and cleanup Feb 19, 2017
nccmp.rb nccmp: update 1.8.2.0_3 bottle for Linuxbrew. Feb 5, 2017
ncl.rb ncl: update 2.1.18 bottle for Linuxbrew. Jun 3, 2016
nco.rb nco: update 4.6.4 bottle. Feb 8, 2017
ncview.rb ncview: update 2.1.7_3 bottle for Linuxbrew. Feb 6, 2017
nest.rb nest: update 2.10.0_3 bottle. Sep 29, 2016
netcdf.rb netcdf: update 4.4.1.1_4 bottle for Linuxbrew. Feb 25, 2017
neuron.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
newick-utils.rb newick-utils: update 1.6 bottle for Linuxbrew. Jun 4, 2016
newicktools.rb newicktools: update 0.1 bottle for Linuxbrew. Jun 10, 2016
nextflow.rb nextflow 0.23.4 Feb 24, 2017
nexusformat.rb nexusformat: update 4.4.3_3 bottle for Linuxbrew. Feb 5, 2017
nfft.rb nfft: update 3.2.3 bottle. Oct 11, 2016
nglib.rb nglib: update 5.3.1 bottle. Dec 7, 2016
niftilib.rb massive audit fix Dec 1, 2015
nip2.rb nip2: update 8.4.0 bottle. Sep 23, 2016
nixio.rb nixio: update 1.3.2_1 bottle for Linuxbrew. Feb 5, 2017
nlopt.rb nlopt: update 2.4.2_2 bottle. Oct 21, 2016
nonpareil.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
novoalign.rb novoalign: update 3.02.13 bottle for Linuxbrew. Jul 11, 2016
ntcard.rb ntcard: add 1.0.0 bottle for Linuxbrew. Jan 11, 2017
numdiff.rb numdiff: add 5.8.1 bottle. Jan 7, 2016
nusmv.rb massive audit fix Dec 1, 2015
nxtrim.rb nxtrim: update 0.4.0_1 bottle for Linuxbrew. Aug 4, 2016
oases.rb oases: update 0.2.08 bottle for Linuxbrew. Oct 14, 2016
oce.rb oce: update 0.18_1 bottle for Linuxbrew. Feb 25, 2017
ococo.rb ococo: add 0.1.2.1 bottle. Aug 30, 2016
octave.rb octave: update 4.2.0_4 bottle for Linuxbrew. Feb 13, 2017
ogdraw.rb ogdraw: Fix Error: no implicit conversion of Array Jan 6, 2017
omcompiler.rb omcompiler: add 1.9.6 bottle. Oct 18, 2016
ome-common.rb ome-common: add 5.3.2 bottle. Nov 4, 2016
ome-files.rb ome-files: update 0.2.3 bottle. Nov 17, 2016
ome-xml.rb ome-xml: update 5.2.4 bottle. Nov 17, 2016
openalpr.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
openblas.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
openbr.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
opencascade.rb opencascade: update 7.1.0 bottle for Linuxbrew. Feb 11, 2017
opencollada.rb opencollada: add 1.6.36 bottle. Jan 23, 2017
opencv.rb opencv: update 2.4.13.2 bottle for Linuxbrew. Feb 24, 2017
opencv3.rb opencv3: fix old homebrew/python dependencies. Jan 25, 2017
openfst.rb openfst: update 1.6.1 bottle for Linuxbrew. Feb 7, 2017
opengrm-ngram.rb opengrm-ngram: update 1.3.2_1 bottle for Linuxbrew. Feb 7, 2017
opengrm-thrax.rb opengrm-thrax: update 1.2.3_1 bottle for Linuxbrew. Feb 7, 2017
openimageio.rb openimageio: update 1.7.11 bottle. Feb 7, 2017
openmeeg.rb massive audit fix Dec 1, 2015
openni.rb openni: add 1.5.7.10 bottle. Jul 25, 2016
openni2.rb massive audit fix Dec 1, 2015
orocos-kdl.rb orocos-kdl: update 1.3.0_2 bottle. Jan 23, 2017
orthofinder.rb orthofinder: add 0.7.1 bottle for Linuxbrew. Aug 2, 2016
osgearth.rb osgearth: remove qt4 support. Dec 12, 2016
oswitch.rb oswitch: add 0.2.6 bottle. Nov 20, 2015
p4est.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
packmol.rb packmol: update 17.039 bottle for Linuxbrew. Feb 21, 2017
paml.rb paml: update 4.9c bottle for Linuxbrew. Nov 30, 2016
pandaseq.rb pandaseq: update 2.10 bottle for Linuxbrew. Oct 29, 2016
parallel-netcdf.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
paraview.rb paraview: update 5.2.0_2 bottle. Feb 19, 2017
parmetis.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
parsnp.rb parsnp: Add desc, bottle :unneeded and fix test Jun 13, 2016
pastix.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
pathd8.rb pathd8: update 1.0 bottle for Linuxbrew. Jun 4, 2016
pathvisio.rb pathvisio 3.2.4 Dec 7, 2016
paxtools.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
pbsuite.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
pcap.rb pcap: use a SHA256 Dec 28, 2015
pcb.rb pcb: update 4.0.0 bottle. Jan 24, 2017
pcl.rb pcl: update 1.8.0_6 bottle. Feb 6, 2017
pear.rb pear: update 0.9.10 bottle for Linuxbrew. Dec 7, 2016
perf.rb massive audit fix Dec 1, 2015
petsc.rb petsc: update 3.7.5 bottle. Feb 12, 2017
phipack.rb phipack: update 2013-03-05 bottle for Linuxbrew. Jul 11, 2016
phlawd.rb phlawd: update 3.4a_2 bottle for Linuxbrew. Oct 13, 2016
phylip.rb phylip: update 3.696 bottle for Linuxbrew. Jun 4, 2016
phyml.rb phyml: update 3.2.0 bottle for Linuxbrew. Jun 4, 2016
phyutility.rb phyutility: Add bottle :unneeded Jun 13, 2016
phyx.rb phyx: add 0.9 bottle for Linuxbrew. Feb 14, 2017
picard-tools.rb picard-tools: update 2.5.0 bottle for Linuxbrew. Jul 31, 2016
piler.rb piler: update 1.0_1 bottle for Linuxbrew. Jun 4, 2016
pilercr.rb pilercr: update 1.06 bottle for Linuxbrew. Jun 4, 2016
pillow.rb pillow: add 3.4.2 bottle. Jan 25, 2017
pilon.rb pilon: update 1.21 bottle for Linuxbrew. Dec 12, 2016
plasma.rb plasma: update 2.8.0_1 bottle. Aug 2, 2016
plink.rb plink: update 1.07 bottle for Linuxbrew. Oct 29, 2016
plink2.rb remove root_url in bottle block Jul 24, 2015
plr.rb plr: update 8.3.0.16_1 bottle. May 11, 2016
pnapi.rb pnapi: add 4.03 bottle. Oct 14, 2016
poa.rb poa: update 2.0 bottle for Linuxbrew. Jun 4, 2016
pocl.rb Don't call deprecated ENV.j1 Feb 5, 2017
populations.rb populations: update 1.2.33-2_1 bottle. Nov 16, 2016
poretools.rb poretools: update 0.6.0_3 bottle. Feb 5, 2017
prank.rb remove root_url in bottle block Jul 24, 2015
primer3.rb primer3: update 2.3.7 bottle. Aug 19, 2016
prodigal.rb prodigal: update 2.6.2 bottle for Linuxbrew. Jun 4, 2016
prokka.rb Prokka 1.11 (revision) Nov 18, 2015
prooftree.rb prooftree: update 0.12 bottle. Feb 10, 2016
propack.rb massive audit fix Dec 1, 2015
proteinortho.rb proteinortho: update 5.15 bottle for Linuxbrew. Oct 29, 2016
proverif.rb proverif: update 1.92 bottle. Jan 20, 2016
psmc.rb psmc: update 0.6.5 bottle for Linuxbrew. Jun 4, 2016
pspp.rb pspp: update 0.10.2_2 bottle. Sep 30, 2016
pulseview.rb pulseview: fixup qt5 dependency. Dec 12, 2016
pykep.rb pykep: update 1.3.9 bottle for Linuxbrew. Feb 18, 2017
pymol.rb pymol: update 1.8.4.0 bottle. Feb 21, 2017
qcl.rb qcl: add 0.6.4_1 bottle. Sep 29, 2016
qhull.rb qhull: update 2015.2 bottle for Linuxbrew. Feb 12, 2017
qr_mumps.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
qrupdate.rb qrupdate: update 1.1.2_4 bottle for Linuxbrew. Feb 13, 2017
qsopt.rb qsopt: update 1.01_1 bottle for Linuxbrew. Jul 1, 2016
qsopt_ex.rb qsopt_ex: add 2.5 bottle. Jun 24, 2016
quaff.rb quaff: add 0.1.1 bottle. Sep 12, 2016
quake.rb quake: depend on gcc@5 (#5131) Feb 13, 2017
qualimap.rb qualimap: update 20160328 bottle. Apr 3, 2016
quast.rb quast: fix old homebrew/python dependencies. Jan 25, 2017
quest.rb quest: update 2.4 bottle for Linuxbrew. Jun 5, 2016
quicktree.rb massive audit fix Dec 1, 2015
quip.rb massive audit fix Dec 1, 2015
quorum.rb quorum: add 1.0.0 bottle for Linuxbrew. Jul 11, 2016
r-gui.rb r-gui: update 1.68 bottle. Dec 7, 2016
r.rb r: update 3.3.2 bottle for Linuxbrew. Nov 2, 2016
r8s.rb r8s: Remove duplicate DOI and tag bioinformatics Aug 12, 2016
racon.rb racon: add 0.5.0 bottle for Linuxbrew. Feb 22, 2017
radx.rb radx: update 20160809_5 bottle for Linuxbrew. Feb 5, 2017
rainbow.rb massive audit fix Dec 1, 2015
rampart.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
rapsearch2.rb rapsearch2: update 2.23 bottle for Linuxbrew. Oct 29, 2016
rate4site.rb rate4site: add 3.0.0 bottle. Jun 27, 2016
raxml.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
ray.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
rcorrector.rb rcorrector: add 1.0.2 bottle for Linuxbrew. Jul 28, 2016
readseq.rb readseq: update 2.1.30 bottle for Linuxbrew. Jun 7, 2016
readsim.rb readsim: update 1.6 bottle for Linuxbrew. Jun 7, 2016
reapr.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
recon.rb recon: update 1.07 bottle for Linuxbrew. Jun 5, 2016
repeatmasker.rb repeatmasker: update 4.0.5 bottle for Linuxbrew. Jun 7, 2016
repeatmodeler.rb repeatmodeler: update 1.0.8_1 bottle for Linuxbrew. Jun 7, 2016
repeatscout.rb repeatscout: update 1.0.5 bottle for Linuxbrew. Oct 5, 2016
rmblast.rb rmblast: update 2.2.28_1 bottle for Linuxbrew. Jun 7, 2016
rml-mmc.rb Don't call deprecated ENV.j1 Feb 5, 2017
rna-star.rb rna-star: update 2.5.2b bottle for Linuxbrew. Nov 3, 2016
rnammer.rb rnammer: update 1.2 bottle for Linuxbrew. Jun 7, 2016
root.rb root: remove qt4 support. Dec 12, 2016
root6.rb root6: update 6.08.02 bottle. Jan 1, 2017
ropebwt.rb massive audit fix Dec 1, 2015
ropebwt2.rb ropebwt2: update r181 bottle for Linuxbrew. Jun 3, 2016
rstudio-server.rb rstudio-server: update 1.0.44 bottle. Nov 19, 2016
sailfish.rb sailfish: update 0.10.1_1 bottle for Linuxbrew. Aug 4, 2016
sais.rb massive audit fix Dec 1, 2015
sally.rb massive audit fix Dec 1, 2015
salmon.rb salmon: update 0.7.2 bottle for Linuxbrew. Sep 16, 2016
salt.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
sambamba.rb sambamba: update 0.6.5 bottle for Linuxbrew. Jan 12, 2017
samblaster.rb samblaster: update 0.1.24 bottle for Linuxbrew. Feb 18, 2017
samtools-0.1.rb samtools-0.1: update 0.1.20 bottle for Linuxbrew. Jun 15, 2016
samtools.rb samtools: update 1.3.1 bottle for Linuxbrew. Jun 30, 2016
sara.rb sara: add 1.13 bottle. Oct 15, 2016
sbagen.rb massive audit fix Dec 1, 2015
scalapack.rb scalapack: update 2.0.2_7 bottle. Oct 25, 2016
scamp.rb scamp: update 2.0.4_1 bottle. Apr 11, 2016
scarpa.rb scarpa: update 0.241 bottle for Linuxbrew. Jun 7, 2016
scotch.rb scotch: update 6.0.4_4 bottle. Oct 2, 2016
scotch5.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
scram.rb scram: add 0.11.6 bottle. Feb 12, 2017
scrm.rb homebrew/science/scrm: update 1.7.2 bottle. Jun 6, 2016
sdsl-lite.rb sdsl-lite: update 2.1.1 bottle for Linuxbrew. Oct 29, 2016
seq-gen.rb massive audit fix Dec 1, 2015
seqan.rb seqan 2.3.1 (#4761) Dec 24, 2016
seqdb.rb seqdb: update 0.2.0_4 bottle for Linuxbrew. Feb 5, 2017
seqtk.rb seqtk: update 1.2 bottle for Linuxbrew. Jul 30, 2016
sequel.rb sequel: update 1.0.2 bottle for Linuxbrew. Oct 30, 2016
sextractor.rb massive audit fix Dec 1, 2015
sfscode.rb Don't call deprecated ENV.j1 Feb 5, 2017
sga.rb sga: update 0.10.14_1 bottle. Feb 17, 2017
shark.rb shark: update 3.1.3 bottle. Sep 3, 2016
shogun.rb shogun: update 4.1.0_4 bottle. Feb 5, 2017
shrimp.rb shrimp: update 2.2.3 bottle for Linuxbrew. Jun 7, 2016
sickle.rb sickle: update 1.33 bottle for Linuxbrew. Jun 7, 2016
sigrok-cli.rb sigrok-cli: add 0.6.0 bottle. Oct 21, 2016
silo.rb silo: update 4.10.2_2 bottle for Linuxbrew. Feb 5, 2017
simpleitk.rb simpleitk: update 0.10.0_1 bottle for Linuxbrew. Jan 10, 2017
simulate-pcr.rb Simulate-PCR 1.2 (new formula) Jun 7, 2015
siril.rb siril: update 0.9.5_1 bottle. Dec 21, 2016
sisl.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
skewer.rb skewer: update 0.2.2 bottle for Linuxbrew. Jul 28, 2016
slepc.rb slepc: update 3.7.3_4 bottle. Feb 12, 2017
slicot.rb massive audit fix Dec 1, 2015
sllib.rb massive audit fix Dec 1, 2015
smalt.rb smalt: update 0.7.6_1 bottle for Linuxbrew. Jun 3, 2016
smrtanalysis.rb smrtanalysis 2.3.0.140936 p5 Mar 17, 2016
snap-aligner.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
snap.rb snap: update 2013-11-29 bottle for Linuxbrew. Jun 3, 2016
snid.rb snid: update 5.0_4 bottle. Feb 17, 2017
snoscan.rb snoscan: update 0.9b bottle for Linuxbrew. Jun 13, 2016
snp-sites.rb snp-sites: update 2.3.2 bottle for Linuxbrew. Nov 1, 2016
snpeff.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
soapdenovo.rb soapdenovo: update 2.04.r240_1 bottle for Linuxbrew. Jul 29, 2016
sollya.rb sollya: add 6.0 bottle. Dec 9, 2016
soplex.rb soplex: add 2.2.1 bottle. Oct 13, 2016
sortmerna.rb sortmerna 2.1: Add an explicit version Sep 29, 2016
spaced.rb Audit fixes for bottle blocks Sep 5, 2016
spades.rb spades: update 3.10.0 bottle for Linuxbrew. Feb 2, 2017
spatialite-gis.rb massive audit fix Dec 1, 2015
spici.rb spici: update 20130427 bottle for Linuxbrew. Jun 7, 2016
squeezambler.rb squeezambler: add 2.0.3 bottle for Linuxbrew. Jun 14, 2016
sratoolkit.rb sratoolkit: update 2.8.1-3 bottle for Linuxbrew. Feb 11, 2017
ssake.rb ssake: update 3.8.4 bottle for Linuxbrew. Jun 7, 2016
stacks.rb stacks: update 1.37 bottle for Linuxbrew. Jun 7, 2016
statismo.rb statismo: Fix audit Feb 7, 2017
stiff.rb SHA256 bottles Nov 20, 2015
stringtie.rb stringtie: update 1.3.3 bottle for Linuxbrew. Feb 16, 2017
suite-sparse.rb suite-sparse: update 4.5.4 bottle for Linuxbrew. Feb 13, 2017
sumo.rb sumo: update 0.28.0 bottle. Feb 15, 2017
sundials.rb sundials: fix cmake audit failure (#5113) Feb 12, 2017
superlu.rb superlu: update 5.2.1_1 bottle for Linuxbrew. Feb 3, 2017
superlu43.rb superlu43: update 4.3_1 bottle. Jan 17, 2016
superlu_dist.rb superlu_dist: update 5.1.0_1 bottle. Nov 7, 2016
superlu_mt.rb superlu_mt: add 3.0 bottle. Aug 21, 2016
swarm.rb swarm: update 2.1.9 bottle for Linuxbrew. Oct 29, 2016
swetest.rb swetest: update 2.01.00 bottle. Jul 31, 2015
swrcfit.rb swrcfit: update 3.0_1 bottle. Feb 6, 2017
symengine.rb symengine: update 0.2.0 bottle for Linuxbrew. Jan 22, 2017
symphony.rb symphony: update 5.6.6_1 bottle. Oct 23, 2016
t-coffee.rb massive audit fix Dec 1, 2015
tabtk.rb tabtk: update 0.1 bottle for Linuxbrew. Oct 29, 2016
tagdust.rb Revert "tagdust: Build a bottle for Linuxbrew" Oct 7, 2016
tap_migrations.json tabix: boneyard May 15, 2016
tasr.rb tasr: update 1.5.1_1 bottle for Linuxbrew. Jun 3, 2016
tbl2asn.rb tbl2asn: update 25.3 bottle for Linuxbrew. Nov 23, 2016
tetgen.rb massive audit fix Dec 1, 2015
therion.rb therion: add 5.3.16_1 bottle. Feb 6, 2017
ticcutils.rb ticcutils: update 0.7_1 bottle. Nov 21, 2015
timbl.rb timbl: update 6.4.6_1 bottle. Nov 22, 2015
tisean.rb tisean: update 3.0.1_3 bottle. Aug 12, 2016
tmv-cpp.rb tmv-cpp: update 0.74 bottle. Dec 12, 2016
topcat.rb massive audit fix Dec 1, 2015
tophat.rb tophat: update 2.1.1_3 bottle for Linuxbrew. Feb 18, 2017
trans-abyss.rb trans-abyss 1.5.5 Nov 2, 2016
trans_proteomic_pipeline.rb trans_proteomic_pipeline: add 4.8.0 bottle. Feb 1, 2017
transdecoder.rb transdecoder: update 3.0.1 bottle for Linuxbrew. Nov 3, 2016
transfig.rb transfig: update 3.2.6a bottle for Linuxbrew. Jan 19, 2017
transpose.rb remove root_url in bottle block Jul 24, 2015
transrate-tools.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
transtermhp.rb massive audit fix Dec 1, 2015
trf.rb trf: update 4.07b bottle for Linuxbrew. Jun 3, 2016
triangle.rb massive audit fix Dec 1, 2015
trilinos.rb trilinos: update 12.10.1_1 bottle. Feb 12, 2017
trimadap.rb trimadap: update 0.1 bottle for Linuxbrew. Jun 2, 2016
trimal.rb trimal: update 1.4.1 bottle for Linuxbrew. Jun 7, 2016
trimmomatic.rb trimmomatic: update 0.36 bottle for Linuxbrew. Jul 30, 2016
trinity.rb trinity: update 2.4.0 bottle for Linuxbrew. Feb 13, 2017
trnascan.rb trnascan: update 1.23 bottle for Linuxbrew. Jun 7, 2016
ucsc-genome-browser.rb Don't call deprecated ENV.j1 Feb 5, 2017
ucto.rb ucto: update 0.8.0_1 bottle. Nov 29, 2015
unafold.rb massive audit fix Dec 1, 2015
uniqtag.rb massive audit fix Dec 1, 2015
uproc.rb uproc: update 1.2.0 bottle for Linuxbrew. Jan 4, 2017
utgb.rb massive audit fix Dec 1, 2015
vague.rb vague: Add desc, bottle :unneeded and fix test Jun 13, 2016
varscan.rb varscan: Add desc, bottle :unneeded and fix test Jun 13, 2016
vcake.rb vcake: update 2.0 bottle for Linuxbrew. Jun 7, 2016
vcfanno.rb vcfanno: update 0.1.0 bottle for Linuxbrew. Feb 17, 2017
vcflib.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
vcftools.rb vcftools: update 0.1.13 bottle for Linuxbrew. Jun 7, 2016
veclibfort.rb veclibfort: update 0.4.2_3 bottle. Oct 21, 2016
velvet.rb velvet: update 1.2.10 bottle for Linuxbrew. Oct 14, 2016
velvetoptimiser.rb massive audit fix Dec 1, 2015
viennarna.rb viennarna: update 2.3.3 bottle for Linuxbrew. Jan 28, 2017
vigra.rb vigra: update 1.11.0.1-alpha1 bottle for Linuxbrew. Feb 6, 2017
vips.rb vips: update 8.4.5 bottle for Linuxbrew. Jan 4, 2017
vislcg3.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
visp.rb visp: update 3.0.1 bottle. Feb 7, 2017
voro++.rb voro++: add 0.4.6 bottle. Jan 26, 2017
vsearch.rb vsearch: Use core/zlib not dupes/zlib for Linuxbrew Feb 24, 2017
vt.rb vt: update 0.5772 bottle for Linuxbrew. Oct 29, 2016
vtk.rb vtk: improve libPythonX.Y.so detection (#5071) Feb 7, 2017
wcalc.rb wcalc: add 1.1 bottle. May 15, 2016
wcslib.rb wcslib: update 5.16_1 bottle. Jan 28, 2017
wcstools.rb wcstools: update 3.9.2 bottle. Oct 23, 2015
weblogo.rb weblogo: update 2.8.2 bottle for Linuxbrew. Jun 7, 2016
wfdb.rb wfdb: update 10.5.24 bottle. Aug 3, 2015
wiggletools.rb wiggletools: add 1.2.1 bottle for Linuxbrew. Dec 19, 2016
wopr.rb Migrate ticcutils, timbl, wopr from core. Mar 30, 2015
wxmaxima.rb wxmaxima: update 16.12.2 bottle. Feb 6, 2017
xbyak.rb massive audit fix Dec 1, 2015
xcdf.rb xcdf: add 2.09.00 bottle. Nov 20, 2015
xmgredit.rb xmgredit: update 5_4 bottle. Feb 5, 2017
xmi-msim.rb xmi-msim: update 5.0_8 bottle. Feb 5, 2017
xraylib.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
xrmc.rb URL updates for XRMC and xraylib (#4290) Sep 15, 2016
xylib.rb xylib: update 1.5 bottle for Linuxbrew. Dec 20, 2016
yaggo.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016
yaha.rb yaha: add 0.1.83 bottle for Linuxbrew. Jun 14, 2016
yass.rb yass: add 1.14 bottle. Jul 27, 2015
yeppp.rb yeppp: update 1.0.0_1 bottle. Dec 4, 2015
zoltan.rb Revert "Use Ruby 1.9+ symbol hash keys in all formulae." (#4345) Sep 24, 2016

README.md

Homebrew Science

BrewSci logo For science.

These formulæ provide software tailored to scientific endeavours. Need to store large amounts of data in a sparse matrix, solve a huge optimization problem or process the images from your space telescope? Maybe we can help!

How do I install these formulæ?

brew install homebrew/science/<formula>

Or brew tap homebrew/science and then brew install <formula>.

Troubleshooting

IMPORTANT First read the Troubleshooting Checklist.

Use brew gist-logs <formula> to create a Gist and post the link in your issue.

Search open and closed issues. See also Homebrew's Common Issues and FAQ.

Documentation

brew help, man brew or check Homebrew's documentation.

Contributing

Please see the contributing guide.