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require 'formula'
class Abyss < Formula
homepage 'http://www.bcgsc.ca/platform/bioinfo/software/abyss'
url 'http://www.bcgsc.ca/downloads/abyss/abyss-1.3.3.tar.gz'
md5 '15953363d4ef5795d3a82d129e4ca240'
head 'https://github.com/sjackman/abyss.git'
# Only header files are used from these packages, so :build is appropriate
depends_on 'boost' => :build
depends_on 'google-sparsehash' => :build
# Snow Leopard comes with mpi but Lion does not
depends_on 'open-mpi' if MacOS.lion?
# strip breaks the ability to read compressed files.
skip_clean 'bin'
def install
system "./configure", "--disable-dependency-tracking",
"--prefix=#{prefix}"
system "make install"
end
def test
system "#{bin}/ABYSS", "--version"
end
end
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