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This repository contains the complete description of how we produced the curated reference databases for the studies in Evolutionary and Environmental Genomics Group (@EvoHull)
Data processing workflow and supplementary data for Li et al. 2019 - Limited dispersion and quick degradation of environmental DNA in fish ponds inferred by metabarcoding
Data processing workflow and supplementary data for Handley et al. 2019 - Temporal and spatial variation in distribution of fish environmental DNA in England’s largest lake
Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes
Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
This repository contains contexts for Docker images build for miscellaneous pieces of bioinformatics software.
Data processing workflow and supplementary data for Li et al. 2018 - The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcoding
MIG Meloidogyne species phylogenomics and and ploidy analysis
Repository contains scripts and supplementary data for Kitson et al. - Nested metabarcoding manuscript
Data repository accompanying the paper 'The genomic basis of cichlid fish adaptation within the deep water 'twilight zone' of Lake Malawi' by Hahn et al.
Data processing workflow and supplementary data for Blackman et al. - First record of GAMMARUS FOSSARUM (Koch, 1836) (AMPHIPODA, GAMMARIDEA) in the UK - a new non-native species discovered using Environmental DNA
Repository for course 'Environmental Genomics Research Projects (egrep)' 2016 @EvoHull
Data for 'Reproducible metabarcoding course' 2016 @EvoHull
Analysis for the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"
Python wrappers for programs that search for transposable elements
Miscellaneous materials (tutorials, exercises, testdata) to develop essential 'survival'-skills in bioinformatics.
Data processing workflow and supplementary data for Haenfling et al. 2016 - Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods
General use python objects
Repository for course 'Environmental Genomics Research Projects (egrep)'
EvoHull bioinformatics and metabarcoding repository
A Galaxy instance with ReproPhylo tools