@HullUni-bioinformatics

HullUni-bioinformatics

  • Temporal and spatial variation in distribution of fish environmental DNA in England’s largest lake

    Updated Jul 22, 2018
  • This repository contains the complete description of how we produced the curated reference databases for the studies in Evolutionary and Environmental Genomics Group (@EvoHull)

    HTML Updated Jul 19, 2018
  • Jupyter Notebook 1 1 Updated Jul 3, 2018
  • Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA analysis tool

    Python 5 1 Updated Jun 12, 2018
  • This repository contains contexts for Docker images build for miscellaneous pieces of bioinformatics software.

    Shell 1 Updated May 23, 2018
  • Data processing workflow and supplementary data for Li et al. 2018 - The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcoding

    R 1 Updated May 16, 2018
  • MIG Meloidogyne species phylogenomics and and ploidy analysis

    Python 2 2 Updated Feb 21, 2018
  • Repository contains scripts and supplementary data for Kitson et al. - Nested metabarcoding manuscript

    HTML Updated Feb 2, 2018
  • CSS Updated Nov 24, 2017
  • Data repository accompanying the paper 'The genomic basis of cichlid fish adaptation within the deep water 'twilight zone' of Lake Malawi' by Hahn et al.

    Jupyter Notebook 1 Updated Jul 31, 2017
  • Data processing workflow and supplementary data for Blackman et al. - First record of GAMMARUS FOSSARUM (Koch, 1836) (AMPHIPODA, GAMMARIDEA) in the UK - a new non-native species discovered using Environmental DNA

    UnrealScript Updated Apr 5, 2017
  • Repository for course 'Environmental Genomics Research Projects (egrep)' 2016 @EvoHull

    HTML 1 Updated Sep 30, 2016
  • Data for 'Reproducible metabarcoding course' 2016 @EvoHull

    HTML 1 1 Updated Sep 14, 2016
  • Analysis for the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

    Jupyter Notebook 3 1 Updated Sep 14, 2016
  • Python wrappers for programs that search for transposable elements

    Jupyter Notebook 8 2 Updated Jul 12, 2016
  • Miscellaneous materials (tutorials, exercises, testdata) to develop essential 'survival'-skills in bioinformatics.

    1 MIT Updated Jul 4, 2016
  • Reproducible Phylogenomics

    Jupyter Notebook 20 4 Updated Jun 28, 2016
  • Data processing workflow and supplementary data for Haenfling et al. 2016 - Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

    R 3 2 Updated Jun 22, 2016
  • General use python objects

    Jupyter Notebook Updated May 8, 2016
  • Python 3 BSD-2-Clause Updated Jan 10, 2016
  • Repository for course 'Environmental Genomics Research Projects (egrep)'

    HTML Updated Oct 1, 2015
  • EvoHull bioinformatics and metabarcoding repository

    HTML 1 1 Updated Jun 10, 2015
  • 1 1 Updated May 29, 2015
  • A Galaxy instance with ReproPhylo tools

    Python 3 1 Updated Dec 4, 2014
  • Python 1 1 Updated Apr 22, 2014