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Snakemake pipeline for Genome Analysis Tool Kit
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.test
envs
schemas
scripts
.editorconfig
.gitattributes
.gitignore
.gitmodules
.travis.yml
Snakefile
bwaindexscript
changechrname.sh
checkline.py
config.yaml
createsequencedict
faidxscript
fixbamheader
fixchr.py
fixcontigheader.py
fixname.py
gvcfscript
gzipscript
headercheck.py
indexbamscript
indexfeaturefilescript
mygene.py
picardCreateSequenceDictionary
removeDuplicatesscript
removeheader
replacesamheader
samples.tsv
samtoolsindex
units.tsv
validatescript
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