@HuttonICS

Information & Computational Sciences (ICS), James Hutton Institute

Hutton ICS staff write or contribute to a number of open source scientific projects, and we try to mirror these here to showcase the breadth of our expertise.

  • Various James Hutton Institute staff contribute to Biopython

    Python 795 Updated Sep 20, 2018
  • Flapjack

    Java 2 BSD-2-Clause Updated Sep 19, 2018
  • Buntata is a flexible and customisable application for aiding in the identification of plant diseases in the field.

    Vue 1 Updated Sep 19, 2018
  • TSIS

    Forked from wyguo/TSIS

    TSIS: an R package to infer time-series isoform switch of alternative splicing

    R 5 GPL-3.0 Updated Sep 19, 2018
  • Buntata is a flexible and customisable application for aiding in the identification of plant diseases in the field.

    Java 1 Apache-2.0 Updated Sep 17, 2018
  • Galaxy wrapper for Kodoja

    2 Updated Sep 14, 2018
  • kodoja

    Forked from abaizan/kodoja

    Kodoja: identifying viruses from plant RNA sequencing data

    Python 3 MIT Updated Sep 14, 2018
  • API

    Forked from plantbreeding/API

    Repository for version control of the BrAPI specifications

    Python 14 Updated Sep 14, 2018
  • CurlyWhirly

    Java 1 BSD-2-Clause Updated Sep 10, 2018
  • tablet

    Forked from imilne/tablet

    Tablet

    Java 1 BSD-2-Clause Updated Aug 30, 2018
  • Phylotype your strains using Clermont's 2013 method

    Python 2 MIT Updated Aug 25, 2018
  • Buntata is a flexible and customisable application for aiding in the identification of plant diseases in the field.

    Java 4 Apache-2.0 Updated Aug 17, 2018
  • Visualisation of BLAST data as interactive heat maps

    R 1 MIT Updated Aug 17, 2018
  • Python module for average nucleotide identity analyses

    Python 23 MIT Updated Aug 17, 2018
  • Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized using common, reusable programming components.

    Java 1 Apache-2.0 Updated Aug 13, 2018
  • Code for design of diagnostic PCR primers, and metabarcoding markers.

    Python 9 MIT Updated Jul 19, 2018
  • Galaxy wrappers for MIRA assembler

    Python 2 Updated Jul 11, 2018
  • Galaxy tools and wrappers for sequence analysis

    Python 17 Updated Jul 11, 2018
  • Galaxy wrappers for NCBI BLAST+ and related BLAST tools.

    Python 48 Updated Jul 6, 2018
  • Strudel

    Java 1 Updated May 26, 2018
  • Germinate Gatekeeper

    Java 1 Apache-2.0 Updated May 16, 2018
  • Systematically record barcodes from internal camera or external barcode scanners

    Java 1 Apache-2.0 Updated Apr 17, 2018
  • ncfp

    Forked from widdowquinn/ncfp

    Program to pull NCBI nucleotide sequences coding for proteins in a protein multiple sequence file

    Python 1 MIT Updated Feb 15, 2018
  • Humbug is a multi-platform barcode generator which can be used alongside our Germinate Scan application to generate sheets of user-defined barcodes to aid in the recording of data in the field or glasshouse.

    Java 1 Apache-2.0 Updated Feb 2, 2018
  • Statistical and evolutionary analysis of multiple sequence alignments

    C 1 Updated Nov 14, 2017
  • Germinate Daim is a Java based desktop application to aid in the upload of experimental datasets into Germinate.

    Java 1 Apache-2.0 Updated Oct 29, 2017
  • Germinate Builder: A tool to easily build Germinate remotely

    Java 1 Apache-2.0 Updated Oct 29, 2017
  • Python code for handling i-ADHoRe output.

    Python 1 GPL-3.0 Updated Dec 23, 2016
  • RLowPC

    Forked from wyguo/RLowPC

    R function to construct Relevance Low order Partial Correlation gene networks

    R 3 GPL-3.0 Updated Jul 19, 2016
  • A bitstring class for netlogo

    Java 2 GPL-3.0 Updated Jun 7, 2016