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Scipion EM Classes
Electron microscopy image processing follows a common workflow. Protocols for the different image processing steps are represented below (click on image to see full size image).
Data objects processed on these protocols are the following:
Each package provides its own implementation of the different protocols, e.g.: Xmipp.
Note: These diagrams were generated using pyreverse in the following way:
pyreverse -A -o png -p protocol pyworkflow/em/protocol* --only-classnames
-A: looks for all ancestors in all classes
-o : specifies output format
-p: generates output files using project name provided
In this example we used
pyworkflow/em/protocol* as input to generate
protocols hierarchy only.
If you get a "No such file or directory" error, you might need to install graphviz
sudo apt-get install graphviz