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Branch: develop
Commits on Apr 4, 2019
  1. update docker image tag for travis as well

    junjun-zhang committed Apr 4, 2019
  2. getting ready for new release 2.7.0

    junjun-zhang committed Apr 4, 2019
  3. Merge pull request #22 from ICGC-TCGA-PanCancer/updateCWLToolVersion

    garyluu committed Apr 4, 2019
    Remove /var/spool/cwl
Commits on Apr 1, 2019
  1. Install new deps from requirements.txt

    garyluu committed Apr 1, 2019
  2. Add a requirements file

    garyluu committed Apr 1, 2019
  3. Remove /var/spool/cwl

    garyluu committed Mar 5, 2019
Commits on Mar 28, 2019
  1. Merge pull request #21 from ICGC-TCGA-PanCancer/documentation-fix

    denis-yuen committed Mar 28, 2019
    updated cwltool version, added missing download ref param
Commits on Mar 1, 2019
  1. Looks like junction plugin is gone.

    denis-yuen committed Mar 1, 2019
    Luckily, we might not be using it
    https://issues.sonatype.org/browse/MVNCENTRAL-1365
  2. Update .travis.yml

    denis-yuen committed Mar 1, 2019
  3. Try to fix build

    denis-yuen committed Mar 1, 2019
  4. updated cwltool version, added missing download ref param

    junjun-zhang committed Mar 1, 2019
Commits on Oct 31, 2018
  1. Merge pull request #19 from ICGC-TCGA-PanCancer/denis-yuen-patch-1

    denis-yuen committed Oct 31, 2018
    Update Dockstore.cwl
  2. Update Dockstore.cwl

    denis-yuen committed Oct 31, 2018
Commits on Oct 2, 2018
  1. Merge pull request #18 from ICGC-TCGA-PanCancer/input-fix

    junjun-zhang committed Oct 2, 2018
    tested
Commits on Sep 30, 2018
  1. remove unneeded input parameters in input jsons

    junjun-zhang committed Sep 30, 2018
Commits on Sep 21, 2018
  1. Merge pull request #16 from ICGC-TCGA-PanCancer/checker

    junjun-zhang committed Sep 21, 2018
    tested by multiple users. Thanks @agduncan94 and @denis-yuen for reviewing
Commits on Sep 19, 2018
  1. .gitignore updated

    baminou committed Sep 19, 2018
  2. Reference result files URL added and filenames replaced for cheker

    baminou committed Sep 19, 2018
Commits on Sep 17, 2018
  1. Checker workflow created

    Ubuntu
    Ubuntu committed Sep 17, 2018
Commits on Jan 11, 2018
  1. minor styling update to doc

    junjun-zhang committed Jan 11, 2018
Commits on Jan 10, 2018
  1. adjustment to documentation

    junjun-zhang committed Jan 10, 2018
Commits on Jan 9, 2018
  1. Update Dockstore.cwl

    denis-yuen committed Jan 9, 2018
Commits on Oct 18, 2017
  1. Update README.md

    denis-yuen committed Oct 18, 2017
Commits on Apr 17, 2017
  1. Create Dockstore_cwl2.json

    garyluu committed Apr 17, 2017
    Changed s3 output to local.
Commits on Mar 3, 2017
  1. Merge pull request #13 from ICGC-TCGA-PanCancer/feature/gosu_and_icgc

    denis-yuen committed Mar 3, 2017
    Feature/gosu and icgc
Commits on Nov 30, 2016
  1. Update readme

    denis-yuen committed Nov 30, 2016
  2. Change embedded reference data

    denis-yuen committed Nov 30, 2016
  3. Set to future tag

    denis-yuen committed Nov 30, 2016
  4. Add new icgc-portal locations

    denis-yuen committed Nov 30, 2016
Commits on Nov 22, 2016
  1. test

    denis-yuen committed Nov 22, 2016
  2. # This is a combination of 5 commits.

    denis-yuen committed Nov 18, 2016
    # The first commit's message is:
    More gosu
    
    # The 2nd commit message will be skipped:
    
    #	More gosu
    
    # The 3rd commit message will be skipped:
    
    #	More gosu
    
    # The 4th commit message will be skipped:
    
    #	Revert "More gosu"
    #
    #	This reverts commit 73cfc91.
    
    # The 5th commit message will be skipped:
    
    #	Revert "More gosu"
    #
    #	This reverts commit c2d93a7.
Commits on Nov 18, 2016
  1. Redirect reference data references inside bwa-mem

    denis-yuen committed Nov 18, 2016
  2. Get rid of another sudo

    denis-yuen committed Nov 18, 2016
  3. Redirect test files to icgc-portal

    denis-yuen committed Nov 18, 2016
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