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Genomics Cohorts Knowledge Ontology

NOTE: This is work in progress.

An ontology to represent genomics cohort attributes. The GECKO is maintained by the CINECA project, https://www.cineca-project.eu, and standardises attributes commonly used for genomics cohort description as well as individual-level data items. A series of tools is being developed to enable automated generation of harmonised data files based on a JSON schema mapping file. For more information please contact info@cineca-project.eu

GECKO currently has two products:

While the OBO view of GECKO conforms to OBO priniciples and reuses classes from upper-level ontologies such as BFO, the IHCC view rearranges the core GECKO terms (including some imported, lower-level terms) and groups them into 5 categories. The labels in the IHCC view are not the rdfs:label from the OBO version, but come from the "IHCC browser label" annotation property.

IHCC GECKO View

© 2020 EMBL-EBI

Distributed under the Creative Commons Attribution 4.0 International (CC BY 4.0) License. The GECKO logo was designed by Spencer Phillips - EMBL-EBI, 2021.