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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,2 +1,6 @@ | ||
| *.pyc | ||
| *.py~ | ||
| example_configs/* | ||
| *.swp | ||
| doc/*/generated | ||
| doc/_* |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,95 @@ | ||
| <!DOCTYPE HTML> | ||
| <!-- | ||
| /* | ||
| * jQuery File Upload Plugin Demo 6.9 | ||
| * https://github.com/blueimp/jQuery-File-Upload | ||
| * | ||
| * Copyright 2010, Sebastian Tschan | ||
| * https://blueimp.net | ||
| * | ||
| * Licensed under the MIT license: | ||
| * http://www.opensource.org/licenses/MIT | ||
| */ | ||
| --> | ||
| <html lang="en"> | ||
| <head> | ||
| <meta charset="utf-8"> | ||
| <title>BIPS</title> | ||
| <meta name="description" content="BIPS is a Python framework for brain imaging to host reusable, queriable and uniquely identifiable workflows. This demo allows users to upload a structural and a resting state functional image and get back a quality assessment report and a view of their statistics relative to other datasets."> | ||
| <meta name="viewport" content="width=device-width, initial-scale=1.0"> | ||
| <!-- Bootstrap CSS Toolkit styles --> | ||
| <link rel="stylesheet" href="css/bootstrap.min.css"> | ||
| <link rel="stylesheet" href="css/bootstrap-responsive.css"> | ||
| <!-- Generic page styles --> | ||
| <link rel="stylesheet" href="css/style.css"> | ||
| <link href="css/docs.css" rel="stylesheet"> | ||
| <!-- CSS to style the file input field as button and adjust the Bootstrap progress bars --> | ||
| <link rel="stylesheet" href="css/jquery.fileupload-ui.css"> | ||
| <!-- Shim to make HTML5 elements usable in older Internet Explorer versions --> | ||
| <!--[if lt IE 9]><script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script><![endif]--> | ||
| <style type='text/css'> | ||
| pre {outline: 1px solid #ccc; padding: 5px; margin: 5px; } | ||
| .string { color: green; } | ||
| .number { color: darkorange; } | ||
| .boolean { color: blue; } | ||
| .null { color: magenta; } | ||
| .key { color: red; } | ||
|
|
||
| </style> | ||
| </head> | ||
|
|
||
| <body data-spy="scroll" data-target=".subnav" data-offset="50"> | ||
|
|
||
| <!-- Navbar | ||
| ================================================== --> | ||
| <div class="navbar navbar-fixed-top"> | ||
| <div class="navbar-inner"> | ||
| <div class="container"> | ||
| <button type="button"class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse"> | ||
| <span class="icon-bar"></span> | ||
| <span class="icon-bar"></span> | ||
| <span class="icon-bar"></span> | ||
| </button> | ||
| <a class="brand" href="./">BIPS</a> | ||
| <div class="nav-collapse"> | ||
| <ul class="nav"> | ||
| <li class=""><a href="./index">Overview</a></li> | ||
| <li class="active"><a href="./workflows">Workflows</a></li> | ||
| <li class=""><a href="./database">Database</a></li> | ||
| <li class=""><a href="./publications">Publications</a></li> | ||
| <li class=""><a href="./neuroview">Neuroview</a></li> | ||
| <li class=""><a href="./links">Links</a></li> | ||
| <li class="divider-vertical"></li> | ||
| <li class=""><a href="./demo">Demo</a></li> | ||
| <li class=""><a href="./status">Status</a></li> | ||
| </ul> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </div> | ||
|
|
||
| <div class="container"> | ||
|
|
||
| <div class="row"> | ||
| **TEMPLATE** | ||
| </div> | ||
|
|
||
| <!-- Footer | ||
| ================================================== --> | ||
| <footer class="footer"> | ||
| <p class="pull-right"><a href="#">Back to top</a></p> | ||
| <p>Brewed at <a href="http://gablab.mit.edu" target="_blank">Gablab@MIT</a> and TankThink Labs LLC. Supported by <a href="http://incf.org>" target="_blank">INCF</a>.</p> | ||
| <p>Code licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0" target="_blank">Apache License v2.0</a>. Documentation licensed under <a href="http://creativecommons.org/licenses/by/3.0/">CC BY 3.0</a>.</p> | ||
| <p>Icons from <a href="http://glyphicons.com">Glyphicons Free</a>, licensed under <a href="http://creativecommons.org/licenses/by/3.0/">CC BY 3.0</a>.</p> | ||
| </footer> | ||
|
|
||
| </div><!-- /container --> | ||
|
|
||
| <script src="//ajax.googleapis.com/ajax/libs/jquery/1.7.2/jquery.min.js"></script> | ||
| <script src="js/bootstrap.js"></script> | ||
| <script src="js/bootstrap-typeahead.js"></script> | ||
| <script src="js/bootstrap-modal.js"></script> | ||
| <!-- The XDomainRequest Transport is included for cross-domain file deletion for IE8+ --> | ||
| <!--[if gte IE 8]><script src="js/cors/jquery.xdr-transport.js"></script><![endif]--> | ||
| </body> | ||
| </html> |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,67 @@ | ||
| import colander | ||
| from colander import Schema | ||
| from deform import Form | ||
| import deform | ||
| import traits.api as traits | ||
|
|
||
| class Schema(colander.MappingSchema): | ||
| pass | ||
|
|
||
| def getNode(_type,tr,config): | ||
| if _type == type(traits.Int()): | ||
| col_type = colander.SchemaNode(colander.Int(), | ||
| name=tr,description=config.trait(tr).desc) | ||
| elif _type == type(traits.Float()): | ||
| col_type = colander.SchemaNode(colander.Decimal(),name=tr) | ||
|
|
||
| elif _type == type(traits.String()) or _type==type(traits.Str()): | ||
| col_type = colander.SchemaNode(colander.String(),name=tr) | ||
|
|
||
| elif _type == type(traits.Enum('')): | ||
| values=config.trait(tr).trait_type.values | ||
| the_values = [] | ||
| for v in values: | ||
| the_values.append((v,v)) | ||
| col_type = colander.SchemaNode( | ||
| deform.Set(), | ||
| widget=deform.widget.SelectWidget(values=the_values), | ||
| name=tr) | ||
| elif _type == type(traits.Bool()): | ||
| col_type = colander.SchemaNode(colander.Boolean(),widget=deform.widget.CheckboxWidget(),name=tr) | ||
| elif _type == type(traits.Code()): | ||
| col_type = colander.SchemaNode(colander.String(),name=tr,widget=deform.widget.TextAreaWidget(cols=100,rows=20)) | ||
| #elif _type == type(traits.Instance()) | ||
| elif _type == type(traits.List()): | ||
| col_type =get_list(_type,tr,config) | ||
| else: | ||
| print "type: ", _type, "not found!" | ||
| col_type = colander.SchemaNode(colander.String(),name=tr) | ||
| return col_type | ||
|
|
||
| def get_form(config): | ||
| schema = colander.Schema() | ||
| all_traits = config.trait_names() | ||
| all_traits.remove('trait_added') | ||
| all_traits.remove('trait_modified') | ||
|
|
||
| for tr in all_traits: | ||
| _type = type(config.trait(tr).trait_type) | ||
|
|
||
| col_type = getNode(_type,tr,config) | ||
|
|
||
| schema.add(col_type) | ||
|
|
||
| form = Form(schema,buttons = ('submit',),action='') | ||
|
|
||
| return form.render(appstruct=config.get()) | ||
|
|
||
| def validator(form,value): | ||
| pass | ||
|
|
||
| def get_list(thetype,tr,config): | ||
| col_type = colander.SchemaNode(colander.String(), | ||
| name=tr, | ||
| description=config.trait(tr).desc, | ||
| widget=deform.widget.TextInputCSVWidget(cols=100,rows=1)) | ||
| return col_type | ||
|
|
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