From d2d7f4df4ef0770d2948a8027cf91c16fda1b1e8 Mon Sep 17 00:00:00 2001
From: okaradeniz <oguzozgurkaradeniz@gmail.com>
Date: Fri, 14 Jul 2023 12:07:52 +0200
Subject: [PATCH 01/11] cite selected dataset version in citation downloads

---
 .../iq/dataverse/FileDownloadServiceBean.java | 74 +++++++++++++++----
 src/main/webapp/dataset-citation.xhtml        |  6 +-
 src/main/webapp/file.xhtml                    |  6 +-
 3 files changed, 64 insertions(+), 22 deletions(-)

diff --git a/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java b/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java
index a90489be29a..ff904c41cb8 100644
--- a/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java
+++ b/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java
@@ -349,6 +349,16 @@ public void downloadDatasetCitationXML(Dataset dataset) {
         downloadCitationXML(null, dataset, false);
     }
 
+    public void downloadDatasetCitationXML(DatasetVersion version) {
+        // DatasetVersion-level citation: 
+    	DataCitation citation=null;
+        citation = new DataCitation(version);
+
+        String fileNameString;
+        fileNameString = "attachment;filename=" + getFileNameFromPid(citation.getPersistentId()) + ".xml";
+        downloadXML(citation, fileNameString);
+    }
+
     public void downloadDatafileCitationXML(FileMetadata fileMetadata) {
         downloadCitationXML(fileMetadata, null, false);
     }
@@ -364,9 +374,6 @@ public void downloadCitationXML(FileMetadata fileMetadata, Dataset dataset, bool
         } else {
             citation= new DataCitation(fileMetadata, direct);
         }
-        FacesContext ctx = FacesContext.getCurrentInstance();
-        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
-        response.setContentType("text/xml");
         String fileNameString;
         if (fileMetadata == null || fileMetadata.getLabel() == null) {
             // Dataset-level citation: 
@@ -375,14 +382,21 @@ public void downloadCitationXML(FileMetadata fileMetadata, Dataset dataset, bool
             // Datafile-level citation:
             fileNameString = "attachment;filename=" + getFileNameFromPid(citation.getPersistentId()) + "-" + FileUtil.getCiteDataFileFilename(citation.getFileTitle(), FileUtil.FileCitationExtension.ENDNOTE);
         }
+        downloadXML(citation, fileNameString);
+    }
+
+    public void downloadXML(DataCitation citation, String fileNameString) {
+        FacesContext ctx = FacesContext.getCurrentInstance();
+        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
+        response.setContentType("text/xml");
         response.setHeader("Content-Disposition", fileNameString);
+
         try {
             ServletOutputStream out = response.getOutputStream();
             citation.writeAsEndNoteCitation(out);
             out.flush();
             ctx.responseComplete();
         } catch (IOException e) {
-
         }
     }
     
@@ -392,6 +406,16 @@ public void downloadDatasetCitationRIS(Dataset dataset) {
 
     }
 
+    public void downloadDatasetCitationRIS(DatasetVersion version) {
+        // DatasetVersion-level citation: 
+        DataCitation citation=null;
+        citation = new DataCitation(version);
+
+        String fileNameString;
+        fileNameString = "attachment;filename=" + getFileNameFromPid(citation.getPersistentId()) + ".ris";
+        downloadRIS(citation, fileNameString);
+    }
+
     public void downloadDatafileCitationRIS(FileMetadata fileMetadata) {
         downloadCitationRIS(fileMetadata, null, false);
     }
@@ -408,10 +432,6 @@ public void downloadCitationRIS(FileMetadata fileMetadata, Dataset dataset, bool
             citation= new DataCitation(fileMetadata, direct);
         }
 
-        FacesContext ctx = FacesContext.getCurrentInstance();
-        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
-        response.setContentType("application/download");
-
         String fileNameString;
         if (fileMetadata == null || fileMetadata.getLabel() == null) {
             // Dataset-level citation: 
@@ -420,6 +440,14 @@ public void downloadCitationRIS(FileMetadata fileMetadata, Dataset dataset, bool
             // Datafile-level citation:
             fileNameString = "attachment;filename=" + getFileNameFromPid(citation.getPersistentId()) + "-" + FileUtil.getCiteDataFileFilename(citation.getFileTitle(), FileUtil.FileCitationExtension.RIS);
         }
+        downloadRIS(citation, fileNameString);
+    }
+    
+    public void downloadRIS(DataCitation citation, String fileNameString) {
+        //SEK 12/3/2018 changing this to open the json in a new tab. 
+        FacesContext ctx = FacesContext.getCurrentInstance();
+        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
+        response.setContentType("application/download");
         response.setHeader("Content-Disposition", fileNameString);
 
         try {
@@ -431,7 +459,7 @@ public void downloadCitationRIS(FileMetadata fileMetadata, Dataset dataset, bool
 
         }
     }
-    
+
     private String getFileNameFromPid(GlobalId id) {
         return id.asString();
     }
@@ -442,6 +470,16 @@ public void downloadDatasetCitationBibtex(Dataset dataset) {
 
     }
 
+    public void downloadDatasetCitationBibtex(DatasetVersion version) {
+        // DatasetVersion-level citation: 
+        DataCitation citation=null;
+        citation = new DataCitation(version);
+
+        String fileNameString;
+        fileNameString = "inline;filename=" + getFileNameFromPid(citation.getPersistentId()) + ".bib";
+        downloadBibtex(citation, fileNameString);
+    }
+
     public void downloadDatafileCitationBibtex(FileMetadata fileMetadata) {
         downloadCitationBibtex(fileMetadata, null, false);
     }
@@ -457,13 +495,7 @@ public void downloadCitationBibtex(FileMetadata fileMetadata, Dataset dataset, b
         } else {
             citation= new DataCitation(fileMetadata, direct);
         }
-        //SEK 12/3/2018 changing this to open the json in a new tab. 
-        FacesContext ctx = FacesContext.getCurrentInstance();
-        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
-        
-        //Fix for 6029 FireFox was failing to parse it when content type was set to json 
-        response.setContentType("text/plain");
-        
+
         String fileNameString;
         if (fileMetadata == null || fileMetadata.getLabel() == null) {
             // Dataset-level citation:
@@ -472,6 +504,16 @@ public void downloadCitationBibtex(FileMetadata fileMetadata, Dataset dataset, b
             // Datafile-level citation:
             fileNameString = "inline;filename=" + getFileNameFromPid(citation.getPersistentId()) + "-" + FileUtil.getCiteDataFileFilename(citation.getFileTitle(), FileUtil.FileCitationExtension.BIBTEX);
         }
+        downloadBibtex(citation, fileNameString);
+    }
+
+    public void downloadBibtex(DataCitation citation, String fileNameString) {
+        //SEK 12/3/2018 changing this to open the json in a new tab. 
+        FacesContext ctx = FacesContext.getCurrentInstance();
+        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
+        
+        //Fix for 6029 FireFox was failing to parse it when content type was set to json 
+        response.setContentType("text/plain");
         response.setHeader("Content-Disposition", fileNameString);
 
         try {
diff --git a/src/main/webapp/dataset-citation.xhtml b/src/main/webapp/dataset-citation.xhtml
index 9baced25be0..4162bfd92e4 100644
--- a/src/main/webapp/dataset-citation.xhtml
+++ b/src/main/webapp/dataset-citation.xhtml
@@ -33,17 +33,17 @@
                     </button>
                     <ul class="dropdown-menu">
                         <li>
-                            <a jsf:id="endNoteLink" jsf:action="#{DatasetPage.fileDownloadService.downloadDatasetCitationXML(DatasetPage.dataset)}" >
+                            <a jsf:id="endNoteLink" jsf:action="#{DatasetPage.fileDownloadService.downloadDatasetCitationXML(DatasetPage.workingVersion)}" >
                                 #{bundle['dataset.cite.downloadBtn.xml']}
                             </a>
                         </li>
                         <li>
-                            <a jsf:id="risLink" jsf:actionListener="#{DatasetPage.fileDownloadService.downloadDatasetCitationRIS(DatasetPage.dataset)}">
+                            <a jsf:id="risLink" jsf:actionListener="#{DatasetPage.fileDownloadService.downloadDatasetCitationRIS(DatasetPage.workingVersion)}">
                                 #{bundle['dataset.cite.downloadBtn.ris']}
                             </a>
                         </li>
                         <li>
-                            <a jsf:id="bibLink" jsf:actionListener="#{DatasetPage.fileDownloadService.downloadDatasetCitationBibtex(DatasetPage.dataset)}" target="_blank">
+                            <a jsf:id="bibLink" jsf:actionListener="#{DatasetPage.fileDownloadService.downloadDatasetCitationBibtex(DatasetPage.workingVersion)}" target="_blank">
                                 #{bundle['dataset.cite.downloadBtn.bib']}
                             </a>
                         </li>
diff --git a/src/main/webapp/file.xhtml b/src/main/webapp/file.xhtml
index 39525568797..703050315d9 100644
--- a/src/main/webapp/file.xhtml
+++ b/src/main/webapp/file.xhtml
@@ -155,17 +155,17 @@
                                                     </button>
                                                     <ul class="dropdown-menu">
                                                         <li>
-                                                            <a jsf:id="endNoteLink" jsf:action="#{FilePage.fileDownloadService.downloadDatasetCitationXML(FilePage.fileMetadata.datasetVersion.dataset)}" >
+                                                            <a jsf:id="endNoteLink" jsf:action="#{FilePage.fileDownloadService.downloadDatasetCitationXML(FilePage.fileMetadata.datasetVersion)}" >
                                                                 #{bundle['dataset.cite.downloadBtn.xml']}
                                                             </a>
                                                         </li>
                                                         <li>
-                                                            <a jsf:id="risLink" jsf:actionListener="#{FilePage.fileDownloadService.downloadDatasetCitationRIS(FilePage.fileMetadata.datasetVersion.dataset)}">
+                                                            <a jsf:id="risLink" jsf:actionListener="#{FilePage.fileDownloadService.downloadDatasetCitationRIS(FilePage.fileMetadata.datasetVersion)}">
                                                                 #{bundle['dataset.cite.downloadBtn.ris']}
                                                             </a>
                                                         </li>
                                                         <li>
-                                                            <a jsf:id="bibLink" jsf:actionListener="#{FilePage.fileDownloadService.downloadDatasetCitationBibtex(FilePage.fileMetadata.datasetVersion.dataset)}" target="_blank">
+                                                            <a jsf:id="bibLink" jsf:actionListener="#{FilePage.fileDownloadService.downloadDatasetCitationBibtex(FilePage.fileMetadata.datasetVersion)}" target="_blank">
                                                                 #{bundle['dataset.cite.downloadBtn.bib']}
                                                             </a>
                                                         </li>

From e48800d700ec6db0f6407b3b4cb29b00f86f8599 Mon Sep 17 00:00:00 2001
From: okaradeniz <oguzozgurkaradeniz@gmail.com>
Date: Fri, 14 Jul 2023 12:07:52 +0200
Subject: [PATCH 02/11] cite selected dataset version in citation downloads

---
 .../iq/dataverse/FileDownloadServiceBean.java | 86 ++++++++++++++-----
 src/main/webapp/dataset-citation.xhtml        |  6 +-
 src/main/webapp/file.xhtml                    |  6 +-
 3 files changed, 70 insertions(+), 28 deletions(-)

diff --git a/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java b/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java
index a90489be29a..229a007ac2e 100644
--- a/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java
+++ b/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java
@@ -349,6 +349,16 @@ public void downloadDatasetCitationXML(Dataset dataset) {
         downloadCitationXML(null, dataset, false);
     }
 
+    public void downloadDatasetCitationXML(DatasetVersion version) {
+        // DatasetVersion-level citation: 
+        DataCitation citation=null;
+        citation = new DataCitation(version);
+
+        String fileNameString;
+        fileNameString = "attachment;filename=" + getFileNameFromPid(citation.getPersistentId()) + ".xml";
+        downloadXML(citation, fileNameString);
+    }
+
     public void downloadDatafileCitationXML(FileMetadata fileMetadata) {
         downloadCitationXML(fileMetadata, null, false);
     }
@@ -358,15 +368,12 @@ public void downloadDirectDatafileCitationXML(FileMetadata fileMetadata) {
     }
 
     public void downloadCitationXML(FileMetadata fileMetadata, Dataset dataset, boolean direct) {
-    	DataCitation citation=null;
+        DataCitation citation=null;
         if (dataset != null){
-        	citation = new DataCitation(dataset.getLatestVersion());
+            citation = new DataCitation(dataset.getLatestVersion());
         } else {
             citation= new DataCitation(fileMetadata, direct);
         }
-        FacesContext ctx = FacesContext.getCurrentInstance();
-        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
-        response.setContentType("text/xml");
         String fileNameString;
         if (fileMetadata == null || fileMetadata.getLabel() == null) {
             // Dataset-level citation: 
@@ -375,14 +382,21 @@ public void downloadCitationXML(FileMetadata fileMetadata, Dataset dataset, bool
             // Datafile-level citation:
             fileNameString = "attachment;filename=" + getFileNameFromPid(citation.getPersistentId()) + "-" + FileUtil.getCiteDataFileFilename(citation.getFileTitle(), FileUtil.FileCitationExtension.ENDNOTE);
         }
+        downloadXML(citation, fileNameString);
+    }
+
+    public void downloadXML(DataCitation citation, String fileNameString) {
+        FacesContext ctx = FacesContext.getCurrentInstance();
+        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
+        response.setContentType("text/xml");
         response.setHeader("Content-Disposition", fileNameString);
+
         try {
             ServletOutputStream out = response.getOutputStream();
             citation.writeAsEndNoteCitation(out);
             out.flush();
             ctx.responseComplete();
         } catch (IOException e) {
-
         }
     }
     
@@ -392,6 +406,16 @@ public void downloadDatasetCitationRIS(Dataset dataset) {
 
     }
 
+    public void downloadDatasetCitationRIS(DatasetVersion version) {
+        // DatasetVersion-level citation: 
+        DataCitation citation=null;
+        citation = new DataCitation(version);
+
+        String fileNameString;
+        fileNameString = "attachment;filename=" + getFileNameFromPid(citation.getPersistentId()) + ".ris";
+        downloadRIS(citation, fileNameString);
+    }
+
     public void downloadDatafileCitationRIS(FileMetadata fileMetadata) {
         downloadCitationRIS(fileMetadata, null, false);
     }
@@ -401,17 +425,13 @@ public void downloadDirectDatafileCitationRIS(FileMetadata fileMetadata) {
     }
 
     public void downloadCitationRIS(FileMetadata fileMetadata, Dataset dataset, boolean direct) {
-    	DataCitation citation=null;
+        DataCitation citation=null;
         if (dataset != null){
-        	citation = new DataCitation(dataset.getLatestVersion());
+            citation = new DataCitation(dataset.getLatestVersion());
         } else {
             citation= new DataCitation(fileMetadata, direct);
         }
 
-        FacesContext ctx = FacesContext.getCurrentInstance();
-        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
-        response.setContentType("application/download");
-
         String fileNameString;
         if (fileMetadata == null || fileMetadata.getLabel() == null) {
             // Dataset-level citation: 
@@ -420,6 +440,14 @@ public void downloadCitationRIS(FileMetadata fileMetadata, Dataset dataset, bool
             // Datafile-level citation:
             fileNameString = "attachment;filename=" + getFileNameFromPid(citation.getPersistentId()) + "-" + FileUtil.getCiteDataFileFilename(citation.getFileTitle(), FileUtil.FileCitationExtension.RIS);
         }
+        downloadRIS(citation, fileNameString);
+    }
+    
+    public void downloadRIS(DataCitation citation, String fileNameString) {
+        //SEK 12/3/2018 changing this to open the json in a new tab. 
+        FacesContext ctx = FacesContext.getCurrentInstance();
+        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
+        response.setContentType("application/download");
         response.setHeader("Content-Disposition", fileNameString);
 
         try {
@@ -431,7 +459,7 @@ public void downloadCitationRIS(FileMetadata fileMetadata, Dataset dataset, bool
 
         }
     }
-    
+
     private String getFileNameFromPid(GlobalId id) {
         return id.asString();
     }
@@ -442,6 +470,16 @@ public void downloadDatasetCitationBibtex(Dataset dataset) {
 
     }
 
+    public void downloadDatasetCitationBibtex(DatasetVersion version) {
+        // DatasetVersion-level citation: 
+        DataCitation citation=null;
+        citation = new DataCitation(version);
+
+        String fileNameString;
+        fileNameString = "inline;filename=" + getFileNameFromPid(citation.getPersistentId()) + ".bib";
+        downloadBibtex(citation, fileNameString);
+    }
+
     public void downloadDatafileCitationBibtex(FileMetadata fileMetadata) {
         downloadCitationBibtex(fileMetadata, null, false);
     }
@@ -451,19 +489,13 @@ public void downloadDirectDatafileCitationBibtex(FileMetadata fileMetadata) {
     }
     
     public void downloadCitationBibtex(FileMetadata fileMetadata, Dataset dataset, boolean direct) {
-    	DataCitation citation=null;
+        DataCitation citation=null;
         if (dataset != null){
-        	citation = new DataCitation(dataset.getLatestVersion());
+            citation = new DataCitation(dataset.getLatestVersion());
         } else {
             citation= new DataCitation(fileMetadata, direct);
         }
-        //SEK 12/3/2018 changing this to open the json in a new tab. 
-        FacesContext ctx = FacesContext.getCurrentInstance();
-        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
-        
-        //Fix for 6029 FireFox was failing to parse it when content type was set to json 
-        response.setContentType("text/plain");
-        
+
         String fileNameString;
         if (fileMetadata == null || fileMetadata.getLabel() == null) {
             // Dataset-level citation:
@@ -472,6 +504,16 @@ public void downloadCitationBibtex(FileMetadata fileMetadata, Dataset dataset, b
             // Datafile-level citation:
             fileNameString = "inline;filename=" + getFileNameFromPid(citation.getPersistentId()) + "-" + FileUtil.getCiteDataFileFilename(citation.getFileTitle(), FileUtil.FileCitationExtension.BIBTEX);
         }
+        downloadBibtex(citation, fileNameString);
+    }
+
+    public void downloadBibtex(DataCitation citation, String fileNameString) {
+        //SEK 12/3/2018 changing this to open the json in a new tab. 
+        FacesContext ctx = FacesContext.getCurrentInstance();
+        HttpServletResponse response = (HttpServletResponse) ctx.getExternalContext().getResponse();
+        
+        //Fix for 6029 FireFox was failing to parse it when content type was set to json 
+        response.setContentType("text/plain");
         response.setHeader("Content-Disposition", fileNameString);
 
         try {
diff --git a/src/main/webapp/dataset-citation.xhtml b/src/main/webapp/dataset-citation.xhtml
index 9baced25be0..4162bfd92e4 100644
--- a/src/main/webapp/dataset-citation.xhtml
+++ b/src/main/webapp/dataset-citation.xhtml
@@ -33,17 +33,17 @@
                     </button>
                     <ul class="dropdown-menu">
                         <li>
-                            <a jsf:id="endNoteLink" jsf:action="#{DatasetPage.fileDownloadService.downloadDatasetCitationXML(DatasetPage.dataset)}" >
+                            <a jsf:id="endNoteLink" jsf:action="#{DatasetPage.fileDownloadService.downloadDatasetCitationXML(DatasetPage.workingVersion)}" >
                                 #{bundle['dataset.cite.downloadBtn.xml']}
                             </a>
                         </li>
                         <li>
-                            <a jsf:id="risLink" jsf:actionListener="#{DatasetPage.fileDownloadService.downloadDatasetCitationRIS(DatasetPage.dataset)}">
+                            <a jsf:id="risLink" jsf:actionListener="#{DatasetPage.fileDownloadService.downloadDatasetCitationRIS(DatasetPage.workingVersion)}">
                                 #{bundle['dataset.cite.downloadBtn.ris']}
                             </a>
                         </li>
                         <li>
-                            <a jsf:id="bibLink" jsf:actionListener="#{DatasetPage.fileDownloadService.downloadDatasetCitationBibtex(DatasetPage.dataset)}" target="_blank">
+                            <a jsf:id="bibLink" jsf:actionListener="#{DatasetPage.fileDownloadService.downloadDatasetCitationBibtex(DatasetPage.workingVersion)}" target="_blank">
                                 #{bundle['dataset.cite.downloadBtn.bib']}
                             </a>
                         </li>
diff --git a/src/main/webapp/file.xhtml b/src/main/webapp/file.xhtml
index 39525568797..703050315d9 100644
--- a/src/main/webapp/file.xhtml
+++ b/src/main/webapp/file.xhtml
@@ -155,17 +155,17 @@
                                                     </button>
                                                     <ul class="dropdown-menu">
                                                         <li>
-                                                            <a jsf:id="endNoteLink" jsf:action="#{FilePage.fileDownloadService.downloadDatasetCitationXML(FilePage.fileMetadata.datasetVersion.dataset)}" >
+                                                            <a jsf:id="endNoteLink" jsf:action="#{FilePage.fileDownloadService.downloadDatasetCitationXML(FilePage.fileMetadata.datasetVersion)}" >
                                                                 #{bundle['dataset.cite.downloadBtn.xml']}
                                                             </a>
                                                         </li>
                                                         <li>
-                                                            <a jsf:id="risLink" jsf:actionListener="#{FilePage.fileDownloadService.downloadDatasetCitationRIS(FilePage.fileMetadata.datasetVersion.dataset)}">
+                                                            <a jsf:id="risLink" jsf:actionListener="#{FilePage.fileDownloadService.downloadDatasetCitationRIS(FilePage.fileMetadata.datasetVersion)}">
                                                                 #{bundle['dataset.cite.downloadBtn.ris']}
                                                             </a>
                                                         </li>
                                                         <li>
-                                                            <a jsf:id="bibLink" jsf:actionListener="#{FilePage.fileDownloadService.downloadDatasetCitationBibtex(FilePage.fileMetadata.datasetVersion.dataset)}" target="_blank">
+                                                            <a jsf:id="bibLink" jsf:actionListener="#{FilePage.fileDownloadService.downloadDatasetCitationBibtex(FilePage.fileMetadata.datasetVersion)}" target="_blank">
                                                                 #{bundle['dataset.cite.downloadBtn.bib']}
                                                             </a>
                                                         </li>

From 14460222d4a84ccfde63eca087058a005fa11cf4 Mon Sep 17 00:00:00 2001
From: kmika11 <katiemika1@gmail.com>
Date: Wed, 27 Mar 2024 16:37:54 -0400
Subject: [PATCH 03/11] Update computational_workflow.tsv

Add href tag to display url in computational workflow metadata block
---
 .../metadatablocks/computational_workflow.tsv | 42 +++++++++----------
 1 file changed, 21 insertions(+), 21 deletions(-)

diff --git a/scripts/api/data/metadatablocks/computational_workflow.tsv b/scripts/api/data/metadatablocks/computational_workflow.tsv
index 51b69cfdb80..72739d35b0f 100644
--- a/scripts/api/data/metadatablocks/computational_workflow.tsv
+++ b/scripts/api/data/metadatablocks/computational_workflow.tsv
@@ -1,21 +1,21 @@
-#metadataBlock	name	dataverseAlias   displayName
-	computationalworkflow		Computational Workflow Metadata
-#datasetField	name	title	description	watermark	 fieldType	displayOrder	displayFormat	advancedSearchField	allowControlledVocabulary	allowmultiples	facetable	displayoncreate	required	parent	metadatablock_id	termURI
-	workflowType	Computational Workflow Type	The kind of Computational Workflow, which is designed to compose and execute a series of computational or data manipulation steps in a scientific application		text	0		TRUE	TRUE	TRUE	TRUE	TRUE	FALSE		computationalworkflow
-	workflowCodeRepository	External Code Repository URL	A link to the repository where the un-compiled, human readable code and related code is located (e.g. GitHub, GitLab, SVN)	https://...	url	1		FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow
-	workflowDocumentation	Documentation	A link (URL) to the documentation or text describing the Computational Workflow and its use		textbox	2		FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow
-#controlledVocabulary	DatasetField	Value	identifier	displayOrder
-	workflowType	Common Workflow Language (CWL)	workflowtype_cwl	1
-	workflowType	Workflow Description Language (WDL)	workflowtype_wdl	2
-	workflowType	Nextflow	workflowtype_nextflow	3
-	workflowType	Snakemake	workflowtype_snakemake	4
-	workflowType	Ruffus	workflowtype_ruffus	5
-	workflowType	DAGMan	workflowtype_dagman	6
-	workflowType	Jupyter Notebook	workflowtype_jupyter	7
-	workflowType	R Notebook	workflowtype_rstudio	8
-	workflowType	MATLAB Script	workflowtype_matlab	9
-	workflowType	Bash Script	workflowtype_bash	10
-	workflowType	Makefile	workflowtype_makefile	11
-	workflowType	Other Python-based workflow	workflowtype_otherpython	12
-	workflowType	Other R-based workflow	workflowtype_otherrbased	13
-	workflowType	Other	workflowtype_other	100
+#metadataBlock	name	dataverseAlias   displayName														
+	computationalworkflow		Computational Workflow Metadata													
+#datasetField	name	title	description	watermark	 fieldType	displayOrder	displayFormat	advancedSearchField	allowControlledVocabulary	allowmultiples	facetable	displayoncreate	required	parent	metadatablock_id	termURI
+	workflowType	Computational Workflow Type	"The kind of Computational Workflow, which is designed to compose and execute a series of computational or data manipulation steps in a scientific application"		text	0		TRUE	TRUE	TRUE	TRUE	TRUE	FALSE		computationalworkflow	
+	workflowCodeRepository	External Code Repository URL	"A link to the repository where the un-compiled, human readable code and related code is located (e.g. GitHub, GitLab, SVN)"	https://...	url	1	"<a href=""#VALUE"" target=""_blank"">#VALUE</a>"	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow	
+	workflowDocumentation	Documentation	A link (URL) to the documentation or text describing the Computational Workflow and its use		textbox	2		FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow	
+#controlledVocabulary	DatasetField	Value	identifier	displayOrder												
+	workflowType	Common Workflow Language (CWL)	workflowtype_cwl	1												
+	workflowType	Workflow Description Language (WDL)	workflowtype_wdl	2												
+	workflowType	Nextflow	workflowtype_nextflow	3												
+	workflowType	Snakemake	workflowtype_snakemake	4												
+	workflowType	Ruffus	workflowtype_ruffus	5												
+	workflowType	DAGMan	workflowtype_dagman	6												
+	workflowType	Jupyter Notebook	workflowtype_jupyter	7												
+	workflowType	R Notebook	workflowtype_rstudio	8												
+	workflowType	MATLAB Script	workflowtype_matlab	9												
+	workflowType	Bash Script	workflowtype_bash	10												
+	workflowType	Makefile	workflowtype_makefile	11												
+	workflowType	Other Python-based workflow	workflowtype_otherpython	12												
+	workflowType	Other R-based workflow	workflowtype_otherrbased	13												
+	workflowType	Other	workflowtype_other	100												
\ No newline at end of file

From 07b92f1d20e8f7505ff7c29452f4b8e81195cf7e Mon Sep 17 00:00:00 2001
From: kmika11 <katiemika1@gmail.com>
Date: Thu, 28 Mar 2024 08:51:33 -0400
Subject: [PATCH 04/11] Update computational_workflow.tsv

Added href tag to "displayFormat" field in computational workflow metadata block tsv file
---
 .../metadatablocks/computational_workflow.tsv | 42 +++++++++----------
 1 file changed, 21 insertions(+), 21 deletions(-)

diff --git a/scripts/api/data/metadatablocks/computational_workflow.tsv b/scripts/api/data/metadatablocks/computational_workflow.tsv
index 72739d35b0f..17e1ec48925 100644
--- a/scripts/api/data/metadatablocks/computational_workflow.tsv
+++ b/scripts/api/data/metadatablocks/computational_workflow.tsv
@@ -1,21 +1,21 @@
-#metadataBlock	name	dataverseAlias   displayName														
-	computationalworkflow		Computational Workflow Metadata													
-#datasetField	name	title	description	watermark	 fieldType	displayOrder	displayFormat	advancedSearchField	allowControlledVocabulary	allowmultiples	facetable	displayoncreate	required	parent	metadatablock_id	termURI
-	workflowType	Computational Workflow Type	"The kind of Computational Workflow, which is designed to compose and execute a series of computational or data manipulation steps in a scientific application"		text	0		TRUE	TRUE	TRUE	TRUE	TRUE	FALSE		computationalworkflow	
-	workflowCodeRepository	External Code Repository URL	"A link to the repository where the un-compiled, human readable code and related code is located (e.g. GitHub, GitLab, SVN)"	https://...	url	1	"<a href=""#VALUE"" target=""_blank"">#VALUE</a>"	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow	
-	workflowDocumentation	Documentation	A link (URL) to the documentation or text describing the Computational Workflow and its use		textbox	2		FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow	
-#controlledVocabulary	DatasetField	Value	identifier	displayOrder												
-	workflowType	Common Workflow Language (CWL)	workflowtype_cwl	1												
-	workflowType	Workflow Description Language (WDL)	workflowtype_wdl	2												
-	workflowType	Nextflow	workflowtype_nextflow	3												
-	workflowType	Snakemake	workflowtype_snakemake	4												
-	workflowType	Ruffus	workflowtype_ruffus	5												
-	workflowType	DAGMan	workflowtype_dagman	6												
-	workflowType	Jupyter Notebook	workflowtype_jupyter	7												
-	workflowType	R Notebook	workflowtype_rstudio	8												
-	workflowType	MATLAB Script	workflowtype_matlab	9												
-	workflowType	Bash Script	workflowtype_bash	10												
-	workflowType	Makefile	workflowtype_makefile	11												
-	workflowType	Other Python-based workflow	workflowtype_otherpython	12												
-	workflowType	Other R-based workflow	workflowtype_otherrbased	13												
-	workflowType	Other	workflowtype_other	100												
\ No newline at end of file
+#metadataBlock	name	dataverseAlias   displayName
+	computationalworkflow		Computational Workflow Metadata
+#datasetField	name	title	description	watermark	 fieldType	displayOrder	displayFormat	advancedSearchField	allowControlledVocabulary	allowmultiples	facetable	displayoncreate	required	parent	metadatablock_id	termURI
+	workflowType	Computational Workflow Type	The kind of Computational Workflow, which is designed to compose and execute a series of computational or data manipulation steps in a scientific application		text	0		TRUE	TRUE	TRUE	TRUE	TRUE	FALSE		computationalworkflow
+	workflowCodeRepository	External Code Repository URL	A link to the repository where the un-compiled, human readable code and related code is located (e.g. GitHub, GitLab, SVN)	https://...	url	1	"<a href=""#VALUE"" target=""_blank"">#VALUE</a>"	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow
+	workflowDocumentation	Documentation	A link (URL) to the documentation or text describing the Computational Workflow and its use		textbox	2		FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow
+#controlledVocabulary	DatasetField	Value	identifier	displayOrder
+	workflowType	Common Workflow Language (CWL)	workflowtype_cwl	1
+	workflowType	Workflow Description Language (WDL)	workflowtype_wdl	2
+	workflowType	Nextflow	workflowtype_nextflow	3
+	workflowType	Snakemake	workflowtype_snakemake	4
+	workflowType	Ruffus	workflowtype_ruffus	5
+	workflowType	DAGMan	workflowtype_dagman	6
+	workflowType	Jupyter Notebook	workflowtype_jupyter	7
+	workflowType	R Notebook	workflowtype_rstudio	8
+	workflowType	MATLAB Script	workflowtype_matlab	9
+	workflowType	Bash Script	workflowtype_bash	10
+	workflowType	Makefile	workflowtype_makefile	11
+	workflowType	Other Python-based workflow	workflowtype_otherpython	12
+	workflowType	Other R-based workflow	workflowtype_otherrbased	13
+	workflowType	Other	workflowtype_other	100
\ No newline at end of file

From 693b263d7c975e7a2ceab6ce20cb5c5406fee405 Mon Sep 17 00:00:00 2001
From: kmika11 <katiemika1@gmail.com>
Date: Thu, 28 Mar 2024 10:01:28 -0400
Subject: [PATCH 05/11] Create 10339-workflow.md

Added release notes for 10339 update
---
 doc/release-notes/10339-workflow.md | 1 +
 1 file changed, 1 insertion(+)
 create mode 100644 doc/release-notes/10339-workflow.md

diff --git a/doc/release-notes/10339-workflow.md b/doc/release-notes/10339-workflow.md
new file mode 100644
index 00000000000..dcc9c1f9690
--- /dev/null
+++ b/doc/release-notes/10339-workflow.md
@@ -0,0 +1 @@
+The computational workflow metadata block has been updated to display the link for the External Code Repository URL field.
\ No newline at end of file

From 4957f02744d7c01a276c26f8326fe555d91b1701 Mon Sep 17 00:00:00 2001
From: Katie Mika <katiemika1@gmail.com>
Date: Thu, 28 Mar 2024 14:08:46 -0400
Subject: [PATCH 06/11] Update doc/release-notes/10339-workflow.md

Clarified that link is now clickable.

Co-authored-by: Philip Durbin <philipdurbin@gmail.com>
---
 doc/release-notes/10339-workflow.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/doc/release-notes/10339-workflow.md b/doc/release-notes/10339-workflow.md
index dcc9c1f9690..8998f9794df 100644
--- a/doc/release-notes/10339-workflow.md
+++ b/doc/release-notes/10339-workflow.md
@@ -1 +1 @@
-The computational workflow metadata block has been updated to display the link for the External Code Repository URL field.
\ No newline at end of file
+The computational workflow metadata block has been updated to present a clickable link for the External Code Repository URL field.
\ No newline at end of file

From 76c67b8333c29cdca0139b11a730c9e2502e14aa Mon Sep 17 00:00:00 2001
From: okaradeniz <oguzozgurkaradeniz@gmail.com>
Date: Tue, 9 Apr 2024 11:50:43 +0200
Subject: [PATCH 07/11] cleanup of unused code

---
 .../iq/dataverse/FileDownloadServiceBean.java | 56 +++++--------------
 src/main/webapp/file.xhtml                    |  6 +-
 2 files changed, 17 insertions(+), 45 deletions(-)

diff --git a/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java b/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java
index 07a25444f27..c5073693ab2 100644
--- a/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java
+++ b/src/main/java/edu/harvard/iq/dataverse/FileDownloadServiceBean.java
@@ -382,35 +382,26 @@ public void explore(GuestbookResponse guestbookResponse, FileMetadata fmd, Exter
         }
     }
 
-    public void downloadDatasetCitationXML(Dataset dataset) {
-        downloadCitationXML(null, dataset, false);
-    }
-
     public void downloadDatasetCitationXML(DatasetVersion version) {
         // DatasetVersion-level citation: 
         DataCitation citation=null;
         citation = new DataCitation(version);
-
         String fileNameString;
         fileNameString = "attachment;filename=" + getFileNameFromPid(citation.getPersistentId()) + ".xml";
         downloadXML(citation, fileNameString);
     }
 
     public void downloadDatafileCitationXML(FileMetadata fileMetadata) {
-        downloadCitationXML(fileMetadata, null, false);
+        downloadCitationXML(fileMetadata, false);
     }
     
     public void downloadDirectDatafileCitationXML(FileMetadata fileMetadata) {
-        downloadCitationXML(fileMetadata, null, true);
+        downloadCitationXML(fileMetadata,  true);
     }
 
-    public void downloadCitationXML(FileMetadata fileMetadata, Dataset dataset, boolean direct) {
+    public void downloadCitationXML(FileMetadata fileMetadata, boolean direct) {
         DataCitation citation=null;
-        if (dataset != null){
-            citation = new DataCitation(dataset.getLatestVersion());
-        } else {
-            citation= new DataCitation(fileMetadata, direct);
-        }
+        citation= new DataCitation(fileMetadata, direct);
         String fileNameString;
         if (fileMetadata == null || fileMetadata.getLabel() == null) {
             // Dataset-level citation: 
@@ -436,12 +427,6 @@ public void downloadXML(DataCitation citation, String fileNameString) {
         } catch (IOException e) {
         }
     }
-    
-    public void downloadDatasetCitationRIS(Dataset dataset) {
-
-        downloadCitationRIS(null, dataset, false);
-
-    }
 
     public void downloadDatasetCitationRIS(DatasetVersion version) {
         // DatasetVersion-level citation: 
@@ -454,21 +439,17 @@ public void downloadDatasetCitationRIS(DatasetVersion version) {
     }
 
     public void downloadDatafileCitationRIS(FileMetadata fileMetadata) {
-        downloadCitationRIS(fileMetadata, null, false);
+        downloadCitationRIS(fileMetadata, false);
     }
     
     public void downloadDirectDatafileCitationRIS(FileMetadata fileMetadata) {
-        downloadCitationRIS(fileMetadata, null, true);
+        downloadCitationRIS(fileMetadata, true);
     }
 
-    public void downloadCitationRIS(FileMetadata fileMetadata, Dataset dataset, boolean direct) {
+    public void downloadCitationRIS(FileMetadata fileMetadata, boolean direct) {
         DataCitation citation=null;
-        if (dataset != null){
-            citation = new DataCitation(dataset.getLatestVersion());
-        } else {
-            citation= new DataCitation(fileMetadata, direct);
-        }
-
+        citation= new DataCitation(fileMetadata, direct);
+        
         String fileNameString;
         if (fileMetadata == null || fileMetadata.getLabel() == null) {
             // Dataset-level citation: 
@@ -501,11 +482,6 @@ private String getFileNameFromPid(GlobalId id) {
         return id.asString();
     }
 
-    public void downloadDatasetCitationBibtex(Dataset dataset) {
-
-        downloadCitationBibtex(null, dataset, false);
-
-    }
 
     public void downloadDatasetCitationBibtex(DatasetVersion version) {
         // DatasetVersion-level citation: 
@@ -518,21 +494,17 @@ public void downloadDatasetCitationBibtex(DatasetVersion version) {
     }
 
     public void downloadDatafileCitationBibtex(FileMetadata fileMetadata) {
-        downloadCitationBibtex(fileMetadata, null, false);
+        downloadCitationBibtex(fileMetadata, false);
     }
 
     public void downloadDirectDatafileCitationBibtex(FileMetadata fileMetadata) {
-        downloadCitationBibtex(fileMetadata, null, true);
+        downloadCitationBibtex(fileMetadata, true);
     }
     
-    public void downloadCitationBibtex(FileMetadata fileMetadata, Dataset dataset, boolean direct) {
+    public void downloadCitationBibtex(FileMetadata fileMetadata, boolean direct) {
         DataCitation citation=null;
-        if (dataset != null){
-            citation = new DataCitation(dataset.getLatestVersion());
-        } else {
-            citation= new DataCitation(fileMetadata, direct);
-        }
-
+        citation= new DataCitation(fileMetadata, direct);
+        
         String fileNameString;
         if (fileMetadata == null || fileMetadata.getLabel() == null) {
             // Dataset-level citation:
diff --git a/src/main/webapp/file.xhtml b/src/main/webapp/file.xhtml
index bcd48fd1f32..ea7b51f9640 100644
--- a/src/main/webapp/file.xhtml
+++ b/src/main/webapp/file.xhtml
@@ -112,19 +112,19 @@
                                                         <li>
                                                             <h:commandLink
                                                                 id="endNoteLink-2" value="#{bundle['dataset.cite.downloadBtn.xml']}"
-                                                                action="#{FilePage.fileDownloadService.downloadCitationXML(FilePage.fileMetadata, null, FilePage.fileMetadata.dataFile.isIdentifierRegistered())}"
+                                                                action="#{FilePage.fileDownloadService.downloadCitationXML(FilePage.fileMetadata, FilePage.fileMetadata.dataFile.isIdentifierRegistered())}"
                                                             />
                                                         </li>
                                                         <li>
                                                             <h:commandLink
                                                                 id="risLink-2" value="#{bundle['dataset.cite.downloadBtn.ris']}"
-                                                                action="#{FilePage.fileDownloadService.downloadCitationRIS(FilePage.fileMetadata, null, FilePage.fileMetadata.dataFile.isIdentifierRegistered())}"
+                                                                action="#{FilePage.fileDownloadService.downloadCitationRIS(FilePage.fileMetadata, FilePage.fileMetadata.dataFile.isIdentifierRegistered())}"
                                                             />
                                                         </li>
                                                         <li>
                                                             <h:commandLink
                                                                 id="bibLink-2" value="#{bundle['dataset.cite.downloadBtn.bib']}" target="_blank"
-                                                                action="#{FilePage.fileDownloadService.downloadCitationBibtex(FilePage.fileMetadata, null, FilePage.fileMetadata.dataFile.isIdentifierRegistered())}"
+                                                                action="#{FilePage.fileDownloadService.downloadCitationBibtex(FilePage.fileMetadata, FilePage.fileMetadata.dataFile.isIdentifierRegistered())}"
                                                             />
                                                         </li>
                                                     </ul>

From 31812f9b4d9189af64faba216e6ed0addd98d361 Mon Sep 17 00:00:00 2001
From: Philip Durbin <philip_durbin@harvard.edu>
Date: Tue, 9 Apr 2024 11:33:48 -0400
Subject: [PATCH 08/11] clarify how to run test suite

remove reference to docker-aio
---
 doc/sphinx-guides/source/developers/testing.rst | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/doc/sphinx-guides/source/developers/testing.rst b/doc/sphinx-guides/source/developers/testing.rst
index 2ea85913d42..3910a40b118 100755
--- a/doc/sphinx-guides/source/developers/testing.rst
+++ b/doc/sphinx-guides/source/developers/testing.rst
@@ -142,6 +142,8 @@ Generally speaking, unit tests have been flagged as non-essential because they a
 You should not feel obligated to run these tests continuously but you can use the ``mvn`` command above to run them.
 To iterate on the unit test in Netbeans and execute it with "Run -> Test File", you must temporarily comment out the annotation flagging the test as non-essential.
 
+.. _integration-tests:
+
 Integration Tests
 -----------------
 
@@ -392,10 +394,10 @@ Run this as the "dataverse" user.
 
 Note that after deployment the file "/usr/local/payara6/glassfish/domains/domain1/config/jacoco.exec" exists and is empty.
 
-Run API Tests
-~~~~~~~~~~~~~
+Run API Tests to Determine Code Coverage
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
-Note that even though you see "docker-aio" in the command below, we assume you are not necessarily running the test suite within Docker. (Some day we'll probably move this script to another directory.) For this reason, we pass the URL with the normal port (8080) that app servers run on to the ``run-test-suite.sh`` script.
+Note that if you are looking for how to run API tests generally, you should refer to :ref:`integration-tests`.
 
 Note that "/usr/local/payara6/glassfish/domains/domain1/config/jacoco.exec" will become non-empty after you stop and start Payara. You must stop and start Payara before every run of the integration test suite.
 
@@ -405,7 +407,8 @@ Note that "/usr/local/payara6/glassfish/domains/domain1/config/jacoco.exec" will
   /usr/local/payara6/bin/asadmin start-domain
   git clone https://github.com/IQSS/dataverse.git
   cd dataverse
-  conf/docker-aio/run-test-suite.sh http://localhost:8080
+  TESTS=$(<tests/integration-tests.txt)
+  mvn test -Dtest=$TESTS
 
 (As an aside, you are not limited to API tests for the purposes of learning which code paths are being executed. You could click around the GUI, for example. Jacoco doesn't know or care how you exercise the application.)
 

From dbc9681f381353ae5bc4bf700997198eb106d97a Mon Sep 17 00:00:00 2001
From: qqmyers <jim.myers@computer.org>
Date: Thu, 11 Apr 2024 06:33:20 -0400
Subject: [PATCH 09/11] Remove visible quote marks

---
 scripts/api/data/metadatablocks/computational_workflow.tsv | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/scripts/api/data/metadatablocks/computational_workflow.tsv b/scripts/api/data/metadatablocks/computational_workflow.tsv
index 17e1ec48925..f3a9b2cce5d 100644
--- a/scripts/api/data/metadatablocks/computational_workflow.tsv
+++ b/scripts/api/data/metadatablocks/computational_workflow.tsv
@@ -2,7 +2,7 @@
 	computationalworkflow		Computational Workflow Metadata
 #datasetField	name	title	description	watermark	 fieldType	displayOrder	displayFormat	advancedSearchField	allowControlledVocabulary	allowmultiples	facetable	displayoncreate	required	parent	metadatablock_id	termURI
 	workflowType	Computational Workflow Type	The kind of Computational Workflow, which is designed to compose and execute a series of computational or data manipulation steps in a scientific application		text	0		TRUE	TRUE	TRUE	TRUE	TRUE	FALSE		computationalworkflow
-	workflowCodeRepository	External Code Repository URL	A link to the repository where the un-compiled, human readable code and related code is located (e.g. GitHub, GitLab, SVN)	https://...	url	1	"<a href=""#VALUE"" target=""_blank"">#VALUE</a>"	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow
+	workflowCodeRepository	External Code Repository URL	A link to the repository where the un-compiled, human readable code and related code is located (e.g. GitHub, GitLab, SVN)	https://...	url	1	<a href=""#VALUE"" target=""_blank"">#VALUE</a>	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow
 	workflowDocumentation	Documentation	A link (URL) to the documentation or text describing the Computational Workflow and its use		textbox	2		FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow
 #controlledVocabulary	DatasetField	Value	identifier	displayOrder
 	workflowType	Common Workflow Language (CWL)	workflowtype_cwl	1
@@ -18,4 +18,4 @@
 	workflowType	Makefile	workflowtype_makefile	11
 	workflowType	Other Python-based workflow	workflowtype_otherpython	12
 	workflowType	Other R-based workflow	workflowtype_otherrbased	13
-	workflowType	Other	workflowtype_other	100
\ No newline at end of file
+	workflowType	Other	workflowtype_other	100

From f4613f1daf3d1ac093a3108dca49c0e7684f8d5e Mon Sep 17 00:00:00 2001
From: qqmyers <jim.myers@computer.org>
Date: Thu, 11 Apr 2024 08:58:22 -0400
Subject: [PATCH 10/11] Update
 scripts/api/data/metadatablocks/computational_workflow.tsv

Co-authored-by: Philip Durbin <philipdurbin@gmail.com>
---
 scripts/api/data/metadatablocks/computational_workflow.tsv | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/api/data/metadatablocks/computational_workflow.tsv b/scripts/api/data/metadatablocks/computational_workflow.tsv
index f3a9b2cce5d..3cd0c26a464 100644
--- a/scripts/api/data/metadatablocks/computational_workflow.tsv
+++ b/scripts/api/data/metadatablocks/computational_workflow.tsv
@@ -2,7 +2,7 @@
 	computationalworkflow		Computational Workflow Metadata
 #datasetField	name	title	description	watermark	 fieldType	displayOrder	displayFormat	advancedSearchField	allowControlledVocabulary	allowmultiples	facetable	displayoncreate	required	parent	metadatablock_id	termURI
 	workflowType	Computational Workflow Type	The kind of Computational Workflow, which is designed to compose and execute a series of computational or data manipulation steps in a scientific application		text	0		TRUE	TRUE	TRUE	TRUE	TRUE	FALSE		computationalworkflow
-	workflowCodeRepository	External Code Repository URL	A link to the repository where the un-compiled, human readable code and related code is located (e.g. GitHub, GitLab, SVN)	https://...	url	1	<a href=""#VALUE"" target=""_blank"">#VALUE</a>	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow
+	workflowCodeRepository	External Code Repository URL	A link to the repository where the un-compiled, human readable code and related code is located (e.g. GitHub, GitLab, SVN)	https://...	url	1	<a href="#VALUE" target="_blank">#VALUE</a>	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow
 	workflowDocumentation	Documentation	A link (URL) to the documentation or text describing the Computational Workflow and its use		textbox	2		FALSE	FALSE	TRUE	FALSE	TRUE	FALSE		computationalworkflow
 #controlledVocabulary	DatasetField	Value	identifier	displayOrder
 	workflowType	Common Workflow Language (CWL)	workflowtype_cwl	1

From 04daca665cf3e08bf858d12d3c69f81b602985d9 Mon Sep 17 00:00:00 2001
From: qqmyers <qqmyers@hotmail.com>
Date: Thu, 11 Apr 2024 17:59:50 -0400
Subject: [PATCH 11/11] missed release note addition

---
 doc/release-notes/10339-workflow.md | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/doc/release-notes/10339-workflow.md b/doc/release-notes/10339-workflow.md
index 8998f9794df..90d08dabb1f 100644
--- a/doc/release-notes/10339-workflow.md
+++ b/doc/release-notes/10339-workflow.md
@@ -1 +1,3 @@
-The computational workflow metadata block has been updated to present a clickable link for the External Code Repository URL field.
\ No newline at end of file
+The computational workflow metadata block has been updated to present a clickable link for the External Code Repository URL field.
+
+Release notes should include the usual instructions, for those who have installed this optional block, to update the computational_workflow block. (PR#10441)
\ No newline at end of file