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2isa suite

The 2isa suite is a collection of programs that can extract metadata out of various metabolomics file formats and write them to ISA-Tab files, creating the backbone for an ISA-Tab study that can then be shared on databases such as MetaboLights. Right now the following source files are supported:

.mzML
XML-like files containing derived spectral data of mass spectrometry scans
.imzML
XML-like files containing metadata about imaging mass spectrometry scans
.nmrML
XML-like files containing derived spectral data of nuclear magnetic resonance scans

http://i.imgur.com/i7eXQDS.png

Documentation

Command Line Applications / Libraries

The command line applications / libraries are currently divided into the mzml2isa package (covering mzML and imzML) and nmrml2isa (covering nmrML).

.. toctree::
   :maxdepth: 2

   mzml2isa  <mzml2isa/index.rst>
   nmrml2isa <nmrml2isa/index.rst>


Graphical User Interfaces

The graphical user interfaces are divided into mzmlisa-qt (covering mzML), imzml2isa-qt (covering imzML) and nmrml2isa-qt (covering nmrML).

.. toctree::
   :maxdepth: 2

   mzml2isa-qt <mzml2isa-qt/index.rst>
   imzml2isa-qt <imzml2isa-qt/index.rst>
   nmrml2isa-qt <nmrml2isa-qt/index.rst>


Galaxy interfaces

The Galaxy interfaces are divided into mzml2isa-galaxy (covering mzML and imzML) and nmrml2isa-galaxy (covering nmrML)

.. toctree::
   :maxdepth: 2

   mzml2isa-galaxy <mzml2isa-galaxy/index.rst>
   nmrml2isa-galaxy <nmrml2isa-galaxy/index.rst>

Other

.. toctree::
   :maxdepth: 2

   Other <other/index.rst>

About

.. toctree::

   Contacts  <contacts.rst>