The 2isa suite is a collection of programs that can extract metadata out of various metabolomics file formats and write them to ISA-Tab files, creating the backbone for an ISA-Tab study that can then be shared on databases such as MetaboLights. Right now the following source files are supported:
Command Line Applications / Libraries
The command line applications / libraries are currently divided into the mzml2isa package (covering mzML and imzML) and nmrml2isa (covering nmrML).
.. toctree:: :maxdepth: 2 mzml2isa <mzml2isa/index.rst> nmrml2isa <nmrml2isa/index.rst>
Graphical User Interfaces
The graphical user interfaces are divided into mzmlisa-qt (covering mzML), imzml2isa-qt (covering imzML) and nmrml2isa-qt (covering nmrML).
.. toctree:: :maxdepth: 2 mzml2isa-qt <mzml2isa-qt/index.rst> imzml2isa-qt <imzml2isa-qt/index.rst> nmrml2isa-qt <nmrml2isa-qt/index.rst>
The Galaxy interfaces are divided into mzml2isa-galaxy (covering mzML and imzML) and nmrml2isa-galaxy (covering nmrML)
.. toctree:: :maxdepth: 2 mzml2isa-galaxy <mzml2isa-galaxy/index.rst> nmrml2isa-galaxy <nmrml2isa-galaxy/index.rst>
.. toctree:: :maxdepth: 2 Other <other/index.rst>
.. toctree:: Contacts <contacts.rst>