nmrml2isa for galaxy
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README.md

nmrml2isa for galaxy

install with bioconda Build Status

This is a Galaxy wrapper for the nmrml2isa python package tool.

nmrml2isa is a program that allows you to convert metabolomic studies in .mzML format to the open ISA-Tab standard supported by the MetaboLights database.

Installation

The recommended installation is by means of the toolshed (https://toolshed.g2.bx.psu.edu/). Dependencies should be installed automatically when using Galaxy version >= 16.10.

The dependencies are dealt with Bioconda. To ensure that Bioconda is working check to make sure the following settings are in the config/galaxy.ini file.

# dependencies before each job runs.
conda_auto_install = True
# Set to True to instruct Galaxy to install Conda from the web automatically
# if it cannot find a local copy and conda_exec is not configured.
conda_auto_init = True

Licence

GNU General Public License v3 (GPLv3)