nmrml2isa for galaxy
This is a Galaxy wrapper for the nmrml2isa python package tool.
- Full documentation: http://2isa.readthedocs.io/en/latest/
- Python PyPi package: https://pypi.python.org/pypi/mzml2isa/
- Github code: https://github.com/ISA-tools/mzml2isa
nmrml2isa is a program that allows you to convert metabolomic studies in .mzML format to the open ISA-Tab standard supported by the MetaboLights database.
The recommended installation is by means of the toolshed (https://toolshed.g2.bx.psu.edu/). Dependencies should be installed automatically when using Galaxy version >= 16.10.
The dependencies are dealt with Bioconda. To ensure that Bioconda is working check to make sure the following settings are in the config/galaxy.ini file.
# dependencies before each job runs. conda_auto_install = True # Set to True to instruct Galaxy to install Conda from the web automatically # if it cannot find a local copy and conda_exec is not configured. conda_auto_init = True
GNU General Public License v3 (GPLv3)