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Illumina

Illumina Open Source Software

Popular repositories

  1. manta Public

    Structural variant and indel caller for mapped sequencing data

    C++ 348 137

  2. hap.py Public

    Haplotype VCF comparison tools

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  3. strelka Public

    Strelka2 germline and somatic small variant caller

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  4. SpliceAI Public

    A deep learning-based tool to identify splice variants

    Python 286 125

  5. Nirvana Public

    The nimble & robust variant annotator

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  6. A tool for estimating repeat sizes

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