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  1. CLARC CLARC Public

    Tool to refine accessory and core COG definitions of a pangenome analysis using linkage in a given population of samples

    Python 2

  2. nfds-tutorial nfds-tutorial Public

    Tutorial that shows the bioinformatics and modeling workflow that we use to study Negative Frequency Dependent Selection (NFDS) in the best bacteria: Streptococcus pneumoniae. Have fun!

    Jupyter Notebook

  3. 2024_GonzalezOjeda_CLARC 2024_GonzalezOjeda_CLARC Public

    Code corresponding to the paper: Linkage-based ortholog refinement in bacterial pangenomes with CLARC (2024)