Open source processing scripts using Anima tools
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atlasing
brain_extraction
diffusion
ms_lesion_segmentation
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License.txt
README.md
configParser.sh
example-config.txt

README.md

Anima-Scripts-Public

Open source scripts for medical image processing from the VISAGES team

This repository includes python and Unix shell scripts (for execution on an OAR cluster). Their goal is to combine several tools from Anima public to accomplish more complex tasks (atlasing, diffusion imaging, brain extraction...).

Installation

Anima-Scripts-Public only requires two packages and a data package:

Installation requires only a few steps described in the installation page