Open source scripts for medical image processing from the VISAGES team
This repository includes python and Unix shell scripts (for execution on an OAR cluster). Their goal is to combine several tools from Anima public to accomplish more complex tasks (atlasing, diffusion imaging, brain extraction...).
Anima-Scripts-Public only requires two packages and a data package:
- Anima public
- Anima scripts data: data required for some scripts to work (brain extraction and diffusion scripts)
Installation requires only a few steps described in the installation page