Intel® Select Solutions for Genomics Analytics
Intel® Select Solutions for Genomics Analytics is an end-to-end, optimized hardware and software solution for analyzing genomic data. It provides a way to run pre-packaged, optimized workﬂows, including the Genome Analysis Toolkit* (GATK*) Best Practices workﬂows from the Broad Institute.
This repo contains a simple smoketest benchmark for HPC clusters ("20k Throughput Run"). The test ensures your HPC system is configured correctly to run whole genome and whole exome samples.
For detailed, line-by-line instructions on how to configure an HPC system for running genomics workflows, please contact your Intel representative.