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Modified Galaxy interface for the Prok pipelines
Python JavaScript C CSS C++ R Other
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contrib
cron
database
display_applications
eggs
external_service_types
lib
locale
openid
scripts
static
templates
test-data
test
tool-data
tools
LICENSE.txt
README.txt
buildbot_setup.sh
community_wsgi.ini
community_wsgi.ini.sample
create_db.sh
datatypes_conf.xml
datatypes_conf.xml.sample
demo_sequencer_wsgi.ini.sample
dist-eggs.ini
distributed_object_store_conf.xml.sample
eggs.ini
external_service_types_conf.xml
external_service_types_conf.xml.sample
extract_dataset_parts.sh
integrated_tool_panel.xml
manage_db.sh
manage_tools.sh
migrated_tools_conf.xml
migrated_tools_conf.xml.sample
openid_conf.xml
openid_conf.xml.sample
paster.log
paster.log.17_29
paster.pid
reports_wsgi.ini
reports_wsgi.ini.sample
run.sh
run_community.sh
run_demo_sequencer.sh
run_functional_tests.sh
run_galaxy_listener.sh
run_reports.sh
run_unit_tests.sh
set_metadata.sh
setup_rabbitmq.sh
shed_tool_conf.xml
shed_tool_conf.xml.sample
tool_conf.xml
tool_conf.xml.main
tool_conf.xml.sample
tool_data_table_conf.xml
tool_data_table_conf.xml.cloud
tool_data_table_conf.xml.oldlocstyle
tool_data_table_conf.xml.sample
tool_data_table_conf.xml_DEF
tool_list.py
tool_sheds_conf.xml
tool_sheds_conf.xml.sample
universe_wsgi.ini
universe_wsgi.ini.sample

README.txt

GALAXY
======
http://galaxyproject.org/

The latest information about Galaxy is always available via the Galaxy
website above.

HOW TO START
============
Galaxy requires Python 2.5, 2.6 or 2.7. To check your python version, run:

% python -V
Python 2.4.4

Start Galaxy:

% sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:

http://localhost:8080

You may wish to make changes from the default configuration.  This can be done
in the universe_wsgi.ini file.  Tools are configured in tool_conf.xml.  Details
on adding tools can be found on the Galaxy website (linked above).

Not all dependencies are included for the tools provided in the sample
tool_conf.xml.  A full list of external dependencies is available at:

http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies
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