FoldAtlas is a repository of genome-wide RNA structure probing data.
The repository is described in detail here.
The live site is available at foldatlas
- On macOS or Linux
- Install the latest versions of:
- Clone this code repository
- Create a python v3.4 environment (using conda or virtualenv)
requirements.txtfile lists the python packages required for development.
Packages required for production are indicated and are mirrored in the provisioning scripts
Setting up a local FoldAtlas
To initialise the local database with the current live database, set
vagrant up in the same folder as this file.
vagrant up call will install and configure the required components.
The webserver address is
foldatlas_load_sql_dump: "no" in the
Subsequent calls to
vagrant up will check each component is the latest and start the webserver.