Tool for automated and reproducible bioimage analysis
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README.rst

The jicbioimage Python package

PyPi package Documentation Status

The jicbioimage Python package makes it easy to explore microscopy data in a programmatic fashion. Exploring images via coding means that the exploratory work becomes recorded and reproducible. Furthermore, it makes it easier to convert the exploratory work into (semi) automated analysis work flows.

Features

  • Built in functionality for working with microscopy data
  • Automatic generation of audit trails
  • IPython integration
  • Cross-platform: Linux, Mac and Windows are all supported
  • Works with Python 2.7, 3.3 and 3.4

Related packages

jicbioimage.core

jicbioimage.transform

jicbioimage.segment

jicbioimage.illustrate