MOLGENIS Advanced Application and Computation Framework for the Life Sciences
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build_animaldb.xml
build_bbmri.xml
build_catalogue.xml
build_chado.xml
build_chd7.xml
build_col7a1.xml
build_common.xml
build_compute.xml
build_compute3.xml
build_designgg.xml
build_euratrans.xml
build_examples.xml
build_filemanager.xml
build_gcc.xml
build_gcc_jpa.xml
build_gids.xml
build_gonl.xml
build_gonl_pheno.xml
build_hemodb.xml
build_ibdportal.xml
build_lifelinesresearchportal.xml
build_lifelinesresearchportal_test.xml
build_myo5b.xml
build_ngs.xml
build_old.xml
build_omicsconnect.xml
build_patho.xml
build_pheno.xml
build_phenoflow.xml
build_sandbox.xml
build_scrum.xml
build_tifn.xml
build_wormqtl.xml
build_xqtl.xml
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demo.txt
molgenis.test.properties
pom_arvc.xml
pom_col7a1.xml
pom_lifelines.xml
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README.md

MOLGENIS

MOLGENIS is an collaborative open source project on a mission to generate great software infrastructure for life science research. Each app in the MOLGENIS family comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services.

Developing your own

Generate your own in three steps:

  1. Clone the MOLGENIS generator and an empty distro:

    git clone https://www.github.com/molgenis/molgenis.git git clone https://www.github.com/molgenis/molgenis_distro.git cd molgenis_distro

  2. Model what you want for your experiment in a simple XML file example db, example ui:

    molgenis.properties molgenis_db.xml molgenis_ui.xml

  3. Run the MOLGENIS generator, after that you're able to use your web application.

MOLGENIS applications

Many molgenis applications have been developed, a not so short overview:

  • xQTL Workbench for multi-level QTL mapping (project)
  • Dystrophic Epidermolysis Bullosa (deb-central) mutation database (project, publication)
  • eXtensible Genotype and Phenotype database (XGAP) (project, publication)
  • Design of Genetical Genomics Experiments (designGG)] (project, publication)
  • BBMRI-NL biobank catalague (project)
  • MAGE-TAB microarray gene experiment object model (MAGETAB-OM)] (project, demo)
  • Pheno-OM Phenotype observation model (project, demo)
  • Mouse Resource Browser (MRB) project] (project, publication)
  • MOLGENIS as data wrapper in Taverna (publication)
  • Animal observation database (AnimalDB) (project)
  • Nordic GWAS control database (project, publication)
  • GWAS Central curation tool (project)
  • Finnish disease database (FINDIS) (project)
  • Bacterial microarrays database (MOLGEN-IS) (publication)
  • Human Metabolic Pathway Database (project, publication)

If you think your project should be listed (differently) please let us know.