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BisPin is a Python 2.7 program that uses BFAST to map bisulfite-treated short DNA reads to a reference genome. It supports the hairpin construction strategy and rescores ambiguously mapped reads. I…
Fast implementations of the Neighbor Net phylogenetic split network method.
A DNA read quality trimmer using entropy created with Python
BFAST-Gap is a modification of the BFAST short DNA read trimmer. BFAST-Gap adds functionality for Ion Torrent DNA reads.
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