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Installing PyMesh

This project uses PyMesh for the 3D mesh creation. This is included as a git submodule (due to the installation via pip being poor and the use through docker being unsatisfactory).

Initialise the submodule

git submodule update --init
cd PyMesh
git submodule update --init

Export path*

export PYMESH_PATH=$(pwd)

Build & install to local pipenv

./setup.py build
cd ..
pipenv shell
cd PyMesh
./setup.py install

Test

python -c "import pymesh; pymesh.test()"

If this fails, the full instructions for building PyMesh can be found here.

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Code to simulate & visualise in 2/3D the interaction between GFP-CRIB and Rac in a single cell

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