diff --git a/astro.config.mjs b/astro.config.mjs
index 5bada5e..22f70f3 100644
--- a/astro.config.mjs
+++ b/astro.config.mjs
@@ -1,14 +1,14 @@
 // @ts-check
-import { defineConfig } from 'astro/config';
-import starlight from '@astrojs/starlight';
-import tailwindcss from '@tailwindcss/vite';
-import rehypeExternalLinks from 'rehype-external-links';
-import { externalLinkIcon } from './external-link-icon.js';
+import { defineConfig } from "astro/config";
+import starlight from "@astrojs/starlight";
+import tailwindcss from "@tailwindcss/vite";
+import rehypeExternalLinks from "rehype-external-links";
+import { externalLinkIcon } from "./external-link-icon.js";
 
 // https://astro.build/config
 export default defineConfig({
-  site: "https://JaneliaSciComp.github.io",
-  base: "/fileglancer-user-docs",
+  site: "https://fileglancer-docs.janelia.org",
+  base: ".",
   markdown: {
     rehypePlugins: [
       [
@@ -74,4 +74,4 @@ export default defineConfig({
   vite: {
     plugins: [tailwindcss()],
   },
-});
\ No newline at end of file
+});
diff --git a/src/content/docs/getting-started/introduction.mdx b/src/content/docs/getting-started/introduction.mdx
index 475acca..4402576 100644
--- a/src/content/docs/getting-started/introduction.mdx
+++ b/src/content/docs/getting-started/introduction.mdx
@@ -31,7 +31,7 @@ Fileglancer addresses common challenges researchers face when working with large
 
 Ready to start using Fileglancer? Here are your next steps:
 
-1. **Access the platform**: Navigate to [fileglancer.int.janelia.org](https://fileglancer.int.janelia.org) from the Janelia network 
-2. **Learn navigation**: Start with the [Navigation Guide](/fileglancer-user-docs/workflows/navigation/) to understand how to browse your data
-3. **Try sharing**: Follow the [Data Links Guide](/fileglancer-user-docs/workflows/data-links/) to create your first shareable data link
-4. **Explore features**: Review the [Features](/fileglancer-user-docs/features/file-browser/) section to understand all available capabilities
\ No newline at end of file
+1. **Access the platform**: Navigate to [fileglancer.int.janelia.org](https://fileglancer.int.janelia.org) from the Janelia network
+2. **Learn navigation**: Start with the [Navigation Guide](../../workflows/navigation/) to understand how to browse your data
+3. **Try sharing**: Follow the [Data Links Guide](../../workflows/data-links/) to create your first shareable data link
+4. **Explore features**: Review the [Features](../../features/file-browser/) section to understand all available capabilities
\ No newline at end of file
diff --git a/src/content/docs/getting-started/quick-start.mdx b/src/content/docs/getting-started/quick-start.mdx
index 26e0b3c..50280ec 100644
--- a/src/content/docs/getting-started/quick-start.mdx
+++ b/src/content/docs/getting-started/quick-start.mdx
@@ -163,9 +163,9 @@ alt="Screenshot of the Fileglancer interface, with an arrow pointing to the Conv
 
 Now that you've completed the basics, explore these guides for more detailed workflows:
 
-- **[Navigation Guide](/fileglancer-user-docs/workflows/navigation/)**: Master all navigation features
-- **[Data Links Guide](/fileglancer-user-docs/workflows/data-links/)**: Learn advanced sharing options
-- **[File Conversion Guide](/fileglancer-user-docs/workflows/file-conversion/)**: Understand the complete conversion process
+- **[Navigation Guide](../../workflows/navigation/)**: Master all navigation features
+- **[Data Links Guide](../../workflows/data-links/)**: Learn advanced sharing options
+- **[File Conversion Guide](../../workflows/file-conversion/)**: Understand the complete conversion process
 
 ## Quick Reference
 
diff --git a/src/content/docs/index.mdx b/src/content/docs/index.mdx
index 0eeb792..52c0f0a 100644
--- a/src/content/docs/index.mdx
+++ b/src/content/docs/index.mdx
@@ -6,10 +6,10 @@ hero:
   tagline: Browse and share large scientific imaging data with ease
   actions:
     - text: Get Started
-      link: /fileglancer-user-docs/getting-started/introduction/
+      link: ./getting-started/introduction/
       icon: right-arrow
     - text: Core Workflows
-      link: /fileglancer-user-docs/workflows/navigation/
+      link: ./workflows/navigation/
       icon: document
       variant: minimal
 ---
@@ -52,17 +52,17 @@ alt="Screenshot of the Fileglancer interface showing a directory of OME-Zarr dat
 	<Card title="Navigate Your Data" icon="right-arrow">
 		Learn how to browse files, save favorites, and efficiently navigate large directory structures.
 
-		[Navigation Guide →](/fileglancer-user-docs/workflows/navigation/)
+		[Navigation Guide →](./workflows/navigation/)
 	</Card>
 	<Card title="Share Data Links" icon="external">
 		Create and manage shareable data links for your datasets with proper access controls.
 
-		[Data Links Guide →](/fileglancer-user-docs/workflows/data-links/)
+		[Data Links Guide →](./workflows/data-links/)
 	</Card>
 	<Card title="Request Conversions" icon="setting">
 		Submit requests for file format conversions and data processing through the integrated help desk system.
 
-		[Conversion Guide →](/fileglancer-user-docs/workflows/file-conversion/)
+		[Conversion Guide →](./workflows/file-conversion/)
 	</Card>
 </CardGrid>
 
diff --git a/src/content/docs/support/getting-help.md b/src/content/docs/support/getting-help.md
index b1398dc..e84b8ff 100644
--- a/src/content/docs/support/getting-help.md
+++ b/src/content/docs/support/getting-help.md
@@ -27,8 +27,8 @@ For data format conversions and processing requests:
 ### Documentation
 
 Before contacting support, consult this user guide. Key sections include:
-1. [**Quick Start Guide**](/fileglancer-user-docs/getting-started/quick-start/): Basic operations and common workflows
-3. [**Troubleshooting**](/fileglancer-user-docs/support/troubleshooting/): Solutions for common problems
+1. [**Quick Start Guide**](../../getting-started/quick-start/): Basic operations and common workflows
+3. [**Troubleshooting**](../troubleshooting/): Solutions for common problems
 
 ### Built-in Help Features