From 2a965c2b180971d84e4cfd296ca6dd1966440b64 Mon Sep 17 00:00:00 2001 From: allison-truhlar Date: Mon, 6 Oct 2025 12:54:51 -0400 Subject: [PATCH 1/3] fix: links to use relative paths rather than hard coded to base url --- src/content/docs/getting-started/introduction.mdx | 8 ++++---- src/content/docs/getting-started/quick-start.mdx | 6 +++--- src/content/docs/index.mdx | 10 +++++----- src/content/docs/support/getting-help.md | 4 ++-- 4 files changed, 14 insertions(+), 14 deletions(-) diff --git a/src/content/docs/getting-started/introduction.mdx b/src/content/docs/getting-started/introduction.mdx index 475acca..4402576 100644 --- a/src/content/docs/getting-started/introduction.mdx +++ b/src/content/docs/getting-started/introduction.mdx @@ -31,7 +31,7 @@ Fileglancer addresses common challenges researchers face when working with large Ready to start using Fileglancer? Here are your next steps: -1. **Access the platform**: Navigate to [fileglancer.int.janelia.org](https://fileglancer.int.janelia.org) from the Janelia network -2. **Learn navigation**: Start with the [Navigation Guide](/fileglancer-user-docs/workflows/navigation/) to understand how to browse your data -3. **Try sharing**: Follow the [Data Links Guide](/fileglancer-user-docs/workflows/data-links/) to create your first shareable data link -4. **Explore features**: Review the [Features](/fileglancer-user-docs/features/file-browser/) section to understand all available capabilities \ No newline at end of file +1. **Access the platform**: Navigate to [fileglancer.int.janelia.org](https://fileglancer.int.janelia.org) from the Janelia network +2. **Learn navigation**: Start with the [Navigation Guide](../../workflows/navigation/) to understand how to browse your data +3. **Try sharing**: Follow the [Data Links Guide](../../workflows/data-links/) to create your first shareable data link +4. **Explore features**: Review the [Features](../../features/file-browser/) section to understand all available capabilities \ No newline at end of file diff --git a/src/content/docs/getting-started/quick-start.mdx b/src/content/docs/getting-started/quick-start.mdx index 26e0b3c..50280ec 100644 --- a/src/content/docs/getting-started/quick-start.mdx +++ b/src/content/docs/getting-started/quick-start.mdx @@ -163,9 +163,9 @@ alt="Screenshot of the Fileglancer interface, with an arrow pointing to the Conv Now that you've completed the basics, explore these guides for more detailed workflows: -- **[Navigation Guide](/fileglancer-user-docs/workflows/navigation/)**: Master all navigation features -- **[Data Links Guide](/fileglancer-user-docs/workflows/data-links/)**: Learn advanced sharing options -- **[File Conversion Guide](/fileglancer-user-docs/workflows/file-conversion/)**: Understand the complete conversion process +- **[Navigation Guide](../../workflows/navigation/)**: Master all navigation features +- **[Data Links Guide](../../workflows/data-links/)**: Learn advanced sharing options +- **[File Conversion Guide](../../workflows/file-conversion/)**: Understand the complete conversion process ## Quick Reference diff --git a/src/content/docs/index.mdx b/src/content/docs/index.mdx index 0eeb792..52c0f0a 100644 --- a/src/content/docs/index.mdx +++ b/src/content/docs/index.mdx @@ -6,10 +6,10 @@ hero: tagline: Browse and share large scientific imaging data with ease actions: - text: Get Started - link: /fileglancer-user-docs/getting-started/introduction/ + link: ./getting-started/introduction/ icon: right-arrow - text: Core Workflows - link: /fileglancer-user-docs/workflows/navigation/ + link: ./workflows/navigation/ icon: document variant: minimal --- @@ -52,17 +52,17 @@ alt="Screenshot of the Fileglancer interface showing a directory of OME-Zarr dat Learn how to browse files, save favorites, and efficiently navigate large directory structures. - [Navigation Guide →](/fileglancer-user-docs/workflows/navigation/) + [Navigation Guide →](./workflows/navigation/) Create and manage shareable data links for your datasets with proper access controls. - [Data Links Guide →](/fileglancer-user-docs/workflows/data-links/) + [Data Links Guide →](./workflows/data-links/) Submit requests for file format conversions and data processing through the integrated help desk system. - [Conversion Guide →](/fileglancer-user-docs/workflows/file-conversion/) + [Conversion Guide →](./workflows/file-conversion/) diff --git a/src/content/docs/support/getting-help.md b/src/content/docs/support/getting-help.md index b1398dc..e84b8ff 100644 --- a/src/content/docs/support/getting-help.md +++ b/src/content/docs/support/getting-help.md @@ -27,8 +27,8 @@ For data format conversions and processing requests: ### Documentation Before contacting support, consult this user guide. Key sections include: -1. [**Quick Start Guide**](/fileglancer-user-docs/getting-started/quick-start/): Basic operations and common workflows -3. [**Troubleshooting**](/fileglancer-user-docs/support/troubleshooting/): Solutions for common problems +1. [**Quick Start Guide**](../../getting-started/quick-start/): Basic operations and common workflows +3. [**Troubleshooting**](../troubleshooting/): Solutions for common problems ### Built-in Help Features From ba5c10da9aeed7577a67926128ba9efc0e9b429c Mon Sep 17 00:00:00 2001 From: allison-truhlar Date: Mon, 6 Oct 2025 12:56:03 -0400 Subject: [PATCH 2/3] chore: update base url --- astro.config.mjs | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/astro.config.mjs b/astro.config.mjs index 5bada5e..b09dd35 100644 --- a/astro.config.mjs +++ b/astro.config.mjs @@ -1,14 +1,14 @@ // @ts-check -import { defineConfig } from 'astro/config'; -import starlight from '@astrojs/starlight'; -import tailwindcss from '@tailwindcss/vite'; -import rehypeExternalLinks from 'rehype-external-links'; -import { externalLinkIcon } from './external-link-icon.js'; +import { defineConfig } from "astro/config"; +import starlight from "@astrojs/starlight"; +import tailwindcss from "@tailwindcss/vite"; +import rehypeExternalLinks from "rehype-external-links"; +import { externalLinkIcon } from "./external-link-icon.js"; // https://astro.build/config export default defineConfig({ site: "https://JaneliaSciComp.github.io", - base: "/fileglancer-user-docs", + base: "/fileglancer-docs", markdown: { rehypePlugins: [ [ @@ -74,4 +74,4 @@ export default defineConfig({ vite: { plugins: [tailwindcss()], }, -}); \ No newline at end of file +}); From 5aa171fe09fe977ba11159c0d4df8f93a3435b29 Mon Sep 17 00:00:00 2001 From: Allison Truhlar Date: Mon, 6 Oct 2025 15:38:43 -0400 Subject: [PATCH 3/3] fix: update site and base URL in astro.config.mjs --- astro.config.mjs | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/astro.config.mjs b/astro.config.mjs index b09dd35..22f70f3 100644 --- a/astro.config.mjs +++ b/astro.config.mjs @@ -7,8 +7,8 @@ import { externalLinkIcon } from "./external-link-icon.js"; // https://astro.build/config export default defineConfig({ - site: "https://JaneliaSciComp.github.io", - base: "/fileglancer-docs", + site: "https://fileglancer-docs.janelia.org", + base: ".", markdown: { rehypePlugins: [ [