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example
plosone-manuscript
HcaMl.m
get_families.m
kinship_matrix.m
match.m
readme.txt
remap_mat.m

readme.txt

Function HcaMl (HcaMl.m) implements the maximum likelihood method for heritable component analysis, which takes family pedigree data as genetic input. The existence of related individuals in the data is required to apply this method. 

Function get_families (get_families.m) is a utility function, which extracts families from given pedigree file and organizes family members in parent - progeny order. This function is designed for preparing input for function PedHQTI and function kinship_matrix (see below).

Function kinship_matrix (kinship_matrix.m) is also a utility function. This function creates kinship matrix that is one of the inputs of PedHQTI.

Function match (match.m) is a utility function that locates elements in first input vector from the second input vector.

For more usage info (such as detailed input and output specifications) of each function, please refer to the header of the specific file that contains the function implementation.

An analysis example with both script and data is provided in the example folder

The manuscript submitted to PlosOne is included in folder plosone-manuscript
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