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MNI152 Template
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Jean-Philippe Fortin
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README.md

README.md

MNITemplate

MNI152 Template


Creator: Jean-Philippe Fortin, jeanphi@mail.med.upenn.edu

Authors: Jean-Philippe Fortin, John Muschelli, Russell T. Shinohara

Software status
Resource: Travis CI
Platform: Linux
R CMD check Build status

Table of content

## 1. Introduction

The MNI152 template.

## 2. Reading the data into R
## 3. Files
File Description Reader
MNI152_TI_1mm.nii.gz T1-w MNI Template, 1mm readMNI("T1")
MNI152_TI_1mm_Brain.nii.gz T1-w MNI Template, 1mm, skull stripped readMNI("Brain")
MNI152_TI_1mm_Brain_Mask.nii.gz T1-w MNI Template, 1mm, brain mask readMNI("Brain_Mask")
MNI152_TI_2mm.nii.gz T1-w MNI Template, 2mm readMNI("T1", res="2mm")
MNI152_TI_2mm_Brain.nii.gz T1-w MNI Template, 2mm, skull stripped readMNI("Brain", res="2mm")
MNI152_TI_2mm_Brain_Mask.nii.gz T1-w MNI Template, 2mm, brain mask readMNI("Brain_Mask", res="2mm")
Tissue Segmentation:
MNI152_TI_1mm_Brain_FAST_seg.nii.gz FSL FAST tissue classes (1=CSF, 2=GM, 3=WM) for 1mm res readMNISeg()
MNI152_TI_2mm_Brain_FAST_seg.nii.gz FSL FAST tissue classes (1=CSF, 2=GM, 3=WM) for 2mm res readMNISeg(res="2mm")
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