db_annovar.toml

title = "ANNOVAR download configuration file"

[db_ucsc_refgene]
source_url = "http://hgdownload.cse.ucsc.edu/goldenPath/{{buildver}}/database/refGene.txt.gz"
version_newest = "refgene"
version_available = ["refgene"]
buildver_available = ["hg38", "hg19", "hg18"]
description = "UCSC goldenPath/{{buildver}}/database/refGene.txt.gz"
after_success = "#R#file.rename('refGene.txt', '{{buildver}}_refGene.txt')#R#"

[db_ucsc_cytoband]
source_url = "http://hgdownload.cse.ucsc.edu/goldenPath/{{buildver}}/database/cytoBand.txt.gz"
version_newest = "cytoband"
version_available = ["cytoband"]
buildver_available = ["hg38", "hg19", "hg18", "mm10", "mm9"]
description = "UCSC goldenPath/{{buildver}}/database/cytoBand.txt.gz"
after_success = "#R#file.rename('cytoBand.txt', '{{buildver}}_cytoBand.txt')#R#"

[db_ucsc_knowngene]
source_url = ["http://hgdownload.cse.ucsc.edu/goldenPath/{{buildver}}/database/knownGene.txt.gz",
              "http://hgdownload.cse.ucsc.edu/goldenPath/{{buildver}}/database/kgXref.txt.gz"]
decompress = "!!glue {rep(TRUE, 2)}"
version_newest = "knowngene"
version_available = ["knowngene"]
buildver_available = ["hg38", "hg19", "hg18"]
description = "UCSC goldenPath/{{buildver}}/database/knownGene.txt.gz and kgXref.txt.gz"
after_success = ["#R#file.rename('knownGene.txt', '{{buildver}}_knownGene.txt')#R#",
                 "#R#file.rename('kgXref.txt', '{{buildver}}_kgXref.txt')#R#"]

[db_ucsc_ensgene]
source_url = "http://hgdownload.cse.ucsc.edu/goldenPath/{{buildver}}/database/ensGene.txt.gz"
version_newest = "ensgene"
version_available = ["ensgene"]
buildver_available = ["hg19", "hg18"]
description = "UCSC goldenPath/{{buildver}}/database/ensGene.txt.gz"
after_success = "#R#file.rename('ensGene.txt', '{{buildver}}_ensGene.txt')#R#"

[db_ucsc_dnase_clustered]
source_url = "http://hgdownload.cse.ucsc.edu/goldenPath/{{buildver}}/encodeDCC/wgEncodeRegDnaseClustered/wgEncodeRegDnaseClustered{{version}}.bed.gz"
version_newest = "V3"
version_available = ["V3"]
buildver_available = ["hg19"]
description = "UCSC DNaseI Hypersensitivity Clusters in 125 cell types from ENCODE"
after_success = "#R#file.rename('wgEncodeRegDnaseClustered{{version}}.bed', '{{buildver}}_wgEncodeRegDnaseClustered{{version}}.bed')#R#"

[db_ucsc_tfbs_clustered]
source_url = "http://hgdownload.cse.ucsc.edu/goldenPath/{{buildver}}/encodeDCC/wgEncodeRegTfbsClustered/wgEncodeRegTfbsClustered{{version}}.bed.gz"
version_newest = "V3"
version_available = ["V3"]
buildver_available = ["hg19"]
description = "UCSC Transcription Factor ChIP-seq (161 factors) from ENCODE with Factorbook Motifs"
after_success = "#R#file.rename('wgEncodeRegTfbsClustered{{version}}.bed', '{{buildver}}_wgEncodeRegTfbsClustered{{version}}.bed')#R#"

[db_annovar_refgene]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_refGene.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_refGeneMrna.fa.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_refGeneVersion.txt.gz"]
decompress = [true, true, true]
version_newest = "refgene"
version_available = ["refgene"]
buildver_available = ["hg38", "hg19"]
description = "FASTA sequences for all annotated transcripts in RefSeq Gene"

[db_annovar_knowngene]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_knownGene.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_knownGeneMrna.fa.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_kgXref.txt.gz"]
decompress = [true, true, true]
version_newest = "knowngene"
version_available = ["knowngene"]
buildver_available = ["hg19", "hg18"]
description = "FASTA sequences for all annotated transcripts in UCSC Known Gene"

[db_annovar_ensgene]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_ensGene.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_ensGeneMrna.fa.gz"]
decompress = [true, true]
version_newest = "ensgene"
version_available = ["ensgene"]
buildver_available = ["hg19"]
description = "FASTA sequences for all annotated transcripts in ENSEMBL Gene"

[db_annovar_avsnp]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "avsnp150"
version_available = ["avsnp150", "avsnp147", "avsnp144", "avsnp142", "avsnp138"]
[db_annovar_avsnp.buildver_available]
avsnp150 = ["hg38", "hg19"]
avsnp147 = ["hg38", "hg19"]
avsnp144 = ["hg38", "hg19"]
avsnp142 = ["hg38", "hg19"]
avsnp138 = ["hg19"]
[db_annovar_avsnp.description]
avsnp147 = "dbSNP147 with allelic splitting and left-normalization"
avsnp144 = "dbSNP144 with allelic splitting and left-normalization (http://annovar.openbioinformatics.org/en/latest/articles/dbSNP/#additional-discussions)"
avsnp142 = "dbSNP142 with allelic splitting and left-normalization"
avsnp138 = "dbSNP138 with allelic splitting and left-normalization"

[db_annovar_avsift]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "avsift"
version_available = "avsift"
buildver_available = ["hg19", "hg18"]
description = "whole-exome SIFT scores for non-synonymous variants (obselete and should not be uesd any more)"

[db_annovar_ljb26_all]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "ljb26_all"
version_available = "ljb26_all"
buildver_available = ["hg38", "hg19", "hg18"]
description = "whole-exome SIFT, PolyPhen2 HDIV, PolyPhen2 HVAR, LRT, MutationTaster, MutationAssessor, FATHMM, MetaSVM, MetaLR, VEST, CADD, GERP++, PhyloP and SiPhy scores from dbNSFP version 2.6"

[db_annovar_dbnsfp]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "dbnsfp35c"
version_available = ["dbnsfp35a", "dbnsfp33a", "dbnsfp31a_interpro", "dbnsfp30a", "dbnsfp35c"]
[db_annovar_dbnsfp.buildver_available]
dbnsfp30a = ["hg38", "hg19", "hg18"]
dbnsfp31a_interpro = ["hg38", "hg19"]
dbnsfp33a = ["hg38", "hg19", "hg18"]
dbnsfp35a = ["hg38", "hg19", "hg18"]
[db_annovar_dbnsfp.description]
dbnsfp30a = "whole-exome SIFT, PolyPhen2 HDIV, PolyPhen2 HVAR, LRT, MutationTaster, MutationAssessor, FATHMM, MetaSVM, MetaLR, VEST, CADD, GERP++, DANN, fitCons, PhyloP and SiPhy scores from dbNSFP version 3.0a"
dbnsfp31a_interpro = "protein domain for variants"
dbnsfp33a = "whole-exome SIFT, PolyPhen2 HDIV, PolyPhen2 HVAR, LRT, MutationTaster, MutationAssessor, FATHMM, PROVEAN, MetaSVM, MetaLR, VEST, M-CAP, CADD, GERP++, DANN, fathmm-MKL, Eigen, GenoCanyon, fitCons, PhyloP and SiPhy scores from dbNSFP version 3.3a"
dbnsfp35a = "whole-exome SIFT, PolyPhen2 HDIV, PolyPhen2 HVAR, LRT, MutationTaster, MutationAssessor, FATHMM, PROVEAN, MetaSVM, MetaLR, VEST, M-CAP, CADD, GERP++, DANN, fathmm-MKL, Eigen, GenoCanyon, fitCons, PhyloP and SiPhy scores from dbNSFP version 3.5a"

[db_annovar_intervar]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "intervar_20180118"
version_available = ["intervar_20170202", "intervar_20180118"]
buildver_available = ["hg19"]
description = "InterVar: clinical interpretation of missense variants"

[db_annovar_cg]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "cg69"
version_available = ["cg69", "cg46"]
buildver_available = ["hg19", "hg18"]
[db_annovar_cg.description]
cg69 = "allele frequency in 69 human subjects sequenced by Complete Genomics"
cg46 = "alternative allele frequency in 46 unrelated human subjects sequenced by Complete Genomics"

[db_annovar_cosmic]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "cosmic70"
version_available = ["cosmic70", "cosmic68wgs", "cosmic68", "cosmic67wgs", "cosmic67", "cosmic65", "cosmic64"]
[db_annovar_cosmic.buildver_available]
cosmic70 = ["hg38", "hg19"]
other = "hg19"

[db_annovar_cosmic.description]
csomic = "COSMIC database version"
cosmic_wgs = "COSMIC database version on WGS data"

[db_annovar_esp6500siv2]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "esp6500siv2_all"
version_available = ["esp6500siv2_ea", "esp6500siv2_aa", "esp6500siv2_all"]
buildver_available = ["hg38", "hg19", "hg18"]
[db_annovar_esp6500siv2.description]
esp6500siv2_ea = "alternative allele frequency in European American subjects in the NHLBI-ESP project with 6500 exomes, including the indel calls and the chrY calls. This is lifted over from hg19 by myself"
esp6500siv2_aa = "alternative allele frequency in African American subjects in the NHLBI-ESP project with 6500 exomes, including the indel calls and the chrY calls. This is lifted over from hg19 by myself."
esp6500siv2_all = "alternative allele frequency in All subjects in the NHLBI-ESP project with 6500 exomes, including the indel calls and the chrY calls. This is lifted over from hg19 by myself."

[db_annovar_exac03]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "exac03notcga"
version_available = ["exac03nontcga", "exac03nonpsych", "exac03"]
[db_annovar_exac03.buildver_available]
exac03nontcga = ["hg38", "hg19"]
exac03nonpsych = ["hg38", "hg19"]
exac03 = ["hg38", "hg19", "hg18"]
[db_annovar_exac03.description]
exac03nontcga = "ExAC on non-TCGA samples (updated header)"
exac03nonpsych = "ExAC on non-Psychiatric disease samples (updated header)"
exac03 = "ExAC 65000 exome allele frequency data for ALL, AFR (African), AMR (Admixed American), EAS (East Asian), FIN (Finnish), NFE (Non-finnish European), OTH (other), SAS (South Asian)). version 0.3. Left normalization done."

[db_annovar_gnomad]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "gnomad_genome"
version_available = ["gnomad_exome", "gnomad_genome", "gnomad211_exome", "gnomad211_genome"]
buildver_available = ["hg38", "hg19"]
[db_annovar_gnomad.description]
gnomad_exome = "gnomAD exome collection"
gnomad_genome = "gnomAD genome collection"
gnomad211_exnome = """gnomAD exome collection (v2.1.1), with "AF AF_popmax AF_male AF_female AF_raw AF_afr AF_sas AF_amr AF_eas AF_nfe AF_fin AF_asj AF_oth non_topmed_AF_popmax non_neuro_AF_popmax non_cancer_AF_popmax controls_AF_popmax" header"""
gnomad211_genome = "same above all"

[db_annovar_kaviar]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "kaviar_20150923"
version_available = ["kaviar_20150923"]
buildver_available = ["hg38", "hg19"]
description = "170 million Known VARiants from 13K genomes and 64K exomes in 34 projects"

[db_annovar_hrcr1]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "hrcr1"
version_available = ["hrcr1"]
buildver_available = ["hg38", "hg19"]
description = "40 million variants from 32K samples in haplotype reference consortium"

[db_annovar_gme]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "gme"
version_available = ["gme"]
buildver_available = ["hg38", "hg19"]
description = "Great Middle East allele frequency including NWA (northwest Africa), NEA (northeast Africa), AP (Arabian peninsula), Israel, SD (Syrian desert), TP (Turkish peninsula) and CA (Central Asia)"

[db_annovar_mcap]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "mcap13"
version_available = ["mcap", "mcap13"]
buildver_available = ["hg38", "hg19"]
description = "M-CAP scores for non-synonymous variants; mcap13:M-CAP scores v1.3, 20181203"

[db_annovar_revel]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "revel"
version_available = ["revel"]
buildver_available = ["hg38", "hg19"]
description = "REVEL scores for non-synonymous variants"

[db_annovar_snp]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "snp138"
version_available = ["snp138", "snp137", "snp135", "snp132", "snp131", "snp130", "snp129", "snp128"]
description = "dbSNP with ANNOVAR index files"
[db_annovar_snp.buildver_available]
snp128 = "hg18"
snp137 = "hg19"
other = ["hg19", "hg18"]

[db_annovar_nci60]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "nci60"
version_available = ["nci60"]
buildver_available = ["hg38", "hg19", "hg18"]
description = "NCI-60 human tumor cell line panel exome sequencing allele frequency data"

[db_annovar_icgc21]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "icgc21"
version_available = ["icgc21"]
buildver_available = ["hg19"]
description = "International Cancer Genome Consortium version 21"

[db_annovar_clinvar]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "clinvar_20170905"
version_available = ["clinvar_20131105", "clinvar_20140211", "clinvar_20140303",
                     "clinvar_20140702", "clinvar_20140902", "clinvar_20140929",
                     "clinvar_20150330", "clinvar_20150629", "clinvar_20151201",
                     "clinvar_20160302", "clinvar_20161128", "clinvar_20170130",
                     "clinvar_20170501", "clinvar_20170905", "clinvar_20180603",
                     "clinvar_20190305"]
description = "CLINVAR database with Variant Clinical Significance (unknown, untested, non-pathogenic, probable-non-pathogenic, probable-pathogenic, pathogenic, drug-response, histocompatibility, other) and Variant disease name"
[db_annovar_clinvar.buildver_available]
clinvar_20140929 = "hg19"
clinvar_20140211 = "hg19"
clinvar_20140303 = "hg19"
other = ["hg38", "hg19"]

[db_annovar_popfreq]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "popfreq_all_20150413"
version_available = ["popfreq_max_20150413", "popfreq_all_20150413"]
buildver_available = ["hg19"]
[db_annovar_popfreq.description]
popfreq_max_20150413 = "A database containing the maximum allele frequency from 1000G, ESP6500, ExAC and CG46"
popfreq_all_20150413 = "A database containing all allele frequency from 1000G, ESP6500, ExAC and CG46"

[db_annovar_mitimpact]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "mitimpact24"
version_available = ["mitimpact2", "mitimpact24"]
buildver_available = ["hg19"]
description = "pathogenicity predictions of human mitochondrial missense variants (http://www.ncbi.nlm.nih.gov/m/pubmed/25516408/)"

[db_annovar_gerp]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "gerp++elem"
version_available = ["gerp++elem", "gerp++gt2"]
[db_annovar_gerp.buildver_available]
grep++elem = ["hg19", "hg18", "mm9"]
gerp++gt2 = ["hg19", "hg18"]

[db_annovar_cadd]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "cadd13"
version_available = ["cadd", "caddgt10", "caddgt20", "cadd13", "cadd13gt10", "cadd13gt20"]
buildver_available = "hg19"
description = "CADD score; 13-version 1.3; gt10-score>10; gt20-score>20"

[db_annovar_fathmm]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "fathmm"
version_available = ["fathmm"]
buildver_available = "hg19"
description = "whole-genome FATHMM_coding and FATHMM_noncoding scores (noncoding and coding scores in the 2015 version was reversed)"

[db_annovar_gwava]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "gwava"
version_available = ["gwava"]
buildver_available = "hg19"
description = "whole genome GWAVA_region_score GWAVA_tss_score GWAVA_unmatched_score, see ref (http://www.nature.com/nmeth/journal/v11/n3/abs/nmeth.2832.html)"

[db_annovar_eigen]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "eigen"
version_available = ["eigen"]
buildver_available = "hg19"
description = "whole-genome Eigen scores, see ref (http://www.ncbi.nlm.nih.gov/pubmed/26727659)"

[db_annovar_1000g]
source_url = "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.zip"
version_newest = "1000g2015aug"
version_available = ["1000g2015aug", "1000g2014oct", "1000g2014sep", "1000g2014aug", "1000g2012apr", "1000g2012feb",
                     "1000g2011may", "1000g2010nov", "1000g2012apr", "1000g2010jul", "1000g2010", "1000g"]
description = "alternative allele frequency data in 1000 Genomes Project"
[db_annovar_1000g.buildver_available]
1000g2015aug = ["hg38", "hg19"]
1000g2014oct = ["hg38", "hg19", "hg18"]
1000g2012apr = ["hg19", "hg18"]
1000g2012jul = "hg18"
1000g2010 = "hg18"
1000g = "hg18"
other = "hg19"

[db_annovar_dbscsnv]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "dbscsnv11"
version_available = ["dbscsnv11"]
buildver_available = ["hg38", "hg19"]
description = "dbscSNV version 1.1 for splice site prediction by AdaBoost and Random Forest"

[db_annovar_dbscsnv_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
decompress = [true, true]
version_newest = "dbscsnv11"
version_available = ["dbscsnv11"]
description = "dbscSNV version 1.1 for splice site prediction by AdaBoost and Random Forest"
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_regsnpintron]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz",
              "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.idx.gz"]
decompress = [true, true]
version_newest = "regsnpintron"
version_available = ["regsnpintron"]
buildver_available = ["hg19", "hg38"]
description = "prioritize the disease-causing probability of intronic SNVs"

[db_annovar_avsnp_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_newest = "avsnp147"
version_available = ["avsnp147", "avsnp147.common", "avsnp144", "avsnp142", "avsnp138"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_cosmic_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_newest = "cosmic81"
version_available = ["cosmic70", "cosmic81"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_1000g_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.tar.gz"
version_newest = "1000g2015aug"
version_available = ["1000g2015aug"]
buildver_available = "hg19"
install = """#R#
for(i in c('all', 'afr', 'eas', 'eur', 'sas', 'amr')) {
  x <- set.1000g.db(sprintf('{{version}}_%s', i), '{{buildver}}', "sql");
  params <- list(sql.file = x, dbname = str_replace(x, '.sql$', ''));
  do.call(sql2sqlite, params)
}
#R#"""

[db_annovar_radar_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_newest = "RADAR2"
version_available = ["RADAR2"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_darned_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_newest = "DARNED"
version_available = ["DARNED"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_clinvar_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_newest = "clinvar_20180603"
version_available = ["clinvar_20170130", "clinvar_20170501", "clinvar_20170905", "clinvar_20180603"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_intervar_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_newest = "intervar_20170202"
version_available = ["intervar_20170202"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_cadd_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_newest = "cadd13"
version_available = ["cadd13", "cadd13gt10", "cadd13gt20", "cadd", "caddgt10", "caddgt20"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_nci60_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_newest = "nci60"
version_available = "nci60"
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_icgc_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_newest = "icgc21"
version_available = "icgc21"
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_dbnsfp_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_newest = "dbnsfp33a"
version_available = ["dbnsfp33a", "dbnsfp31a_interpro", "dbnsfp30a"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_normal_pool]
source_url = ["http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_normal{{version}}.txt.gz"]
version_newest = "2016sih_wes_ball"
version_available = ['2016sih_wes_ball', '2016sih_wes_tall', '2016sih_wes_nkt', '2016sih_wgs_nkt', '2016sih_wgs_dlbcl', '2018sih_wgs_nkt_full']
buildver_available = "hg19"
description = "Variants called from normal control samples (SIH)"

[db_annovar_normal_pool_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_normal{{version}}.sql.gz"
version_newest = "2018sih_wgs_nkt_full_sqlite"
version_available = ['2018sih_wgs_nkt_full_sqlite']
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_normal{{version}}.sql', dbname = '{{buildver}}_normal{{version}}.sqlite')#R#"
description = "Variants called from normal control samples (SIH), big files"

[db_annovar_epi_genes]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_epi_genes_{{version}}.txt"
decompress = false
version_available = ["v1.1"]
buildver_available = "hg19"
description = "Epigenetic genes defined in 'The landscape of somatic mutations in epigenetic regulators across 1,000 paediatric cancer genomes', doi:10.1038/ncomms4630"

[db_annovar_cscd]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.txt.gz"
version_available = ["cscd_cancer_circrna", "cscd_common_circrna", "cscd_normal_circrna"]
buildver_available = ["hg19", "hg38"]
description = "Download from http://gb.whu.edu.cn/CSCD/, Cancer specific circRNA database."

[db_annovar_varcards]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.txt.gz"
version_available = "varcards"
buildver_available = "hg19"
description = "Variants data download from http://varcards.biols.ac.cn, Varcards is an integrated genetic and clinical database for coding variants in the human genome. doi:10.1093/nar/gkx1039"

[db_annovar_varcards_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sql.gz"
version_available = "varcards"
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_hgnc]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.txt.gz"
version_available = "hgnc_coding"
buildver_available = "hg19"
description = "HGNC is responsible for approving unique symbols and names for human loci, including protein coding genes, ncRNA genes and pseudogenes, to allow unambiguous scientific communication. hg19_hgnc_coding is the ftp://ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/hgnc_complete_set.txt"

[db_annovar_brvar]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{license}}/{{buildver}}_{{version}}.txt.gz"
version_available = ["brvar_v1_core", "brvar_v1_extra"]
buildver_available = "hg19"
note = "not available now"
[db_annovar_brvar.description]
brvar_v1_core = "Integrated 1285 cases B-cell acute lymphoblastic leukemia (B-ALL) from public data portal. Variant calling result, using GATK (Haplotypecaller, UnifiedGenotyper), Lofreq and Varscan2, be merged (bases with baseQ/BAQ >13;minimum coverge>=10; maximum alt allele frequency >= 0.04; alt allel read number >= 3; only the varinats that mutation type is missense, nonsense, frameshift del, frameshift del, nonframeshift del, nonframeshift del, stoploss, nonsense and unknown be included)"
brvar_v1_extra = "Complementary set of core, such as Synonymous mutation, intron, intergenic, UTR3 and UTR5, .etc"

[db_annovar_loftool_scores]
source_url = "http://www.openbioinformatics.org/annovar/download/{{version}}.txt.gz"
version_available = "LoFtool_scores"
buildver_available = "hg19"
[db_annovar_loftool_scores.description]
LoFtool_scores="LoFtool score: gene loss-of-function score percentiles. The smaller the percentile, the most intolerant is the gene to functional variation. The file can be downloaded [here](http://clark.compbio.iupui.edu/regsnp_intron_web/). Manuscript in preparation (please contact Dr. Joao Fadista - joao.fadista@med.lu.se). The authors would like to thank the Exome Aggregation Consortium and the groups that provided exome variant data for comparison. A full list of contributing groups can be found at http://exac.broadinstitute.org/about."

[db_annovar_rvis_esv_score]
source_url = "http://www.openbioinformatics.org/annovar/download/{{version}}.txt.gz"
version_available = "RVIS_ExAC_4KW"
buildver_available = "hg19"
[db_annovar_rvis_esv_score.description]
RVIS_ExAC_4KW = "RVIS-ESV score: RVIS score measures genetic intolerance of genes to functional mutations, as described in [Petrovski et al.](http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1003709) Original RVIS was constructed based on patterns of standing variation in 6503 samples. The authors have recently constructed scores based on the ~61,000 samples from ExAC. There is high correlation, but more resolution for many genes. The ExAC cohort implementation is what we consider RVIS (v2). It can be downloaded here."

[db_annovar_gdi_score]
source_url = "http://www.openbioinformatics.org/annovar/download/{{version}}.txt.gz"
version_available = "GDI_full_10282015"
buildver_available = "hg19"
[db_annovar_gdi_score.description]
GDI_full_10282015 = "GDI score: the gene damage index (GDI) is describing the accumulated mutational damage for each human gene in the general population, and shows that highly mutated/damaged genes are unlikely to be disease-causing and yet they generate a big proportion of false positive variants harbored in such genes. Therefore removing high GDI genes is a very effective way to remove confidently false positives from WES/WGS data. More details were given in [this paper](http://www.pnas.org/content/early/2015/10/14/1518646112.abstract). The data set includes general damage prediction (low/medium/high) for different disease type (all, Mendelian, cancer, and PID) and can be downloaded from here."

[db_annovar_tmcsnpdb]
source_url = "http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz"
version_available = "tmcsnpdb"
buildver_available = "hg38"
[db_annovar_tmcsnpdb.description]
tmcsnpdb="TMC-SNPDB: SNP database from whole exome data of 62 normal samples derived from cancer patients of Indian origin, representing 114, 309 unique germline variants. Read the manuscript [here](http://database.oxfordjournals.org/content/2016/baw104.full). It is useful for exome sequencing studies on Indian populations and can be downloaded from here."

[db_annovar_rediportal_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = ["REDIportal"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_gme_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = ["gme"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_hrcr1_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = ["hrcr1"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_revel_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = ["revel"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_mcap_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = ["mcap"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_exac03_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = ["exac03", "exac03nonpsych", "exac03nontcga"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_gnomad_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = ["gnomad_exome", "gnomad_genome"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_popfreq_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = ["popfreq_all_20150413", "popfreq_max_20150413"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_gwava_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = ["gwava"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_eigen_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = ["eigen"]
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_dhs_gene_connectivity]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.txt.gz"
version_available = "dhs_gene_connectivity_2012"
buildver_available = "hg19"
description = "Genomic coordinates of all promoter DHSs and distal, non-promoter DHSs within +-500 kb correlated with them at threshold 0.7."

[db_annovar_seeqtl]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.txt.gz"
version_available = ["seeqtl_qvalue_hapmap3_cis", "seeqtl_qvalue_hapmap3_trans", "seeqtl_qvalue_myers_cis", "seeqtl_qvalue_myers_trans"]
buildver_available = "hg19"
description = "eQTLs of meta-analysis (consensus eQTLs) from HapMap human lymphoblastoid cell lines; eQTLs of human brain from Myers et al, see http://www.bios.unc.edu/research/genomic_software/seeQTL/data_source"

[db_annovar_gtex_eqtl_egenes]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_gtex_{{version}}.v7.egenes.txt.gz"
version_available = ["adipose_subcutaneous", "adipose_visceral_omentum", "adrenal_gland", "artery_aorta", "artery_coronary", "artery_tibial", "brain_amygdala", "brain_anterior_cingulate_cortex_ba24", "brain_caudate_basal_ganglia", "brain_cerebellar_hemisphere", "brain_cerebellum", "brain_cortex", "brain_frontal_cortex_ba9", "brain_hippocampus", "brain_hypothalamus", "brain_nucleus_accumbens_basal_ganglia", "brain_putamen_basal_ganglia", "brain_spinal_cord_cervical_c_1", "brain_substantia_nigra", "breast_mammary_tissue", "cells_ebv_transformed_lymphocytes", "cells_transformed_fibroblasts", "colon_sigmoid", "colon_transverse", "esophagus_gastroesophageal_junction", "esophagus_mucosa", "esophagus_muscularis", "heart_atrial_appendage", "heart_left_ventricle", "liver", "lung", "minor_salivary_gland", "muscle_skeletal", "nerve_tibial", "ovary", "pancreas", "pituitary", "prostate", "skin_not_sun_exposed_suprapubic", "skin_sun_exposed_lower_leg", "small_intestine_terminal_ileum", "spleen", "stomach", "testis", "thyroid", "uterus", "vagina", "whole_blood"]
buildver_available = "hg19"
description = "eQTLs of GTEx."

[db_annovar_gtex_eqtl_pairs]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_gtex_{{version}}.v7.signif_variant_gene_pairs.txt.gz"
version_available = ["adipose_subcutaneous", "adipose_visceral_omentum", "adrenal_gland", "artery_aorta", "artery_coronary", "artery_tibial", "brain_amygdala", "brain_anterior_cingulate_cortex_ba24", "brain_caudate_basal_ganglia", "brain_cerebellar_hemisphere", "brain_cerebellum", "brain_cortex", "brain_frontal_cortex_ba9", "brain_hippocampus", "brain_hypothalamus", "brain_nucleus_accumbens_basal_ganglia", "brain_putamen_basal_ganglia", "brain_spinal_cord_cervical_c_1", "brain_substantia_nigra", "breast_mammary_tissue", "cells_ebv_transformed_lymphocytes", "cells_transformed_fibroblasts", "colon_sigmoid", "colon_transverse", "esophagus_gastroesophageal_junction", "esophagus_mucosa", "esophagus_muscularis", "heart_atrial_appendage", "heart_left_ventricle", "liver", "lung", "minor_salivary_gland", "muscle_skeletal", "nerve_tibial", "ovary", "pancreas", "pituitary", "prostate", "skin_not_sun_exposed_suprapubic", "skin_sun_exposed_lower_leg", "small_intestine_terminal_ileum", "spleen", "stomach", "testis", "thyroid", "uterus", "vagina", "whole_blood"]
buildver_available = "hg19"
description = "eQTLs of GTEx significant variant gene paris."

[db_annovar_rddpred_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = "rddpred_mes"
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_lncediting_sqlite]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = "lncediting"
buildver_available = "hg19"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_civic_gene_summaries]
source_url = "https://civic.genome.wustl.edu/downloads/{{version}}/{{version}}-GeneSummaries.tsv"
version_available = "nightly"
buildver_available = ["hg19", "hg38"]
install = "#R#file.rename('{{version}}-GeneSummaries.tsv', '{{version}}_civic_gene_summaries.txt')#R#"

[db_annovar_omim_genemap2]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{version}}.txt.gz"
version_available = ["omim_genemap2"]
buildver_available = "hg19"
description = "omim genemap2 txt file, download from http://www.omim.org/"

[db_annovar_tall_somatic_genes]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/tall_somatic_genes_{{version}}.txt"
version_available = "20171206"
buildver_available = ["hg19", "hg38"]
description = "Collected from recently published papers, 1) Recurrent SPI1 (PU.1) fusions in high-risk pediatric T cell acute lymphoblastic leukemia 2) The genomic landscape of pediatric and young adult T-lineage acute lymphoblastic leukemia 3) Identification of fusion genes and characterization of transcriptome features in T-cell acute lymphoblastic leukemia"

[db_annovar_docm]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.txt.gz"
version_available = "docm_3.2"
buildver_available = ["hg19"]
description = "DoCM, the Database of Curated Mutations, is a highly curated database of known, disease-causing mutations that provides easily explorable variant lists with direct links to source citations for easy verification. http://docm.genome.wustl.edu/about"

[db_annovar_intogen]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{buildver}}_{{version}}.sqlite.sql.gz"
version_available = "intogen_20180119"
buildver_available = ["hg19"]
description = "Merged intogen table intogen_mutations_catalog [Driver or passenger mutations]. https://www.intogen.org/downloads"
install = "#R#sql2sqlite('{{buildver}}_{{version}}.sqlite.sql', dbname = '{{buildver}}_{{version}}.sqlite')#R#"

[db_annovar_disgenet]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{version}}.txt.gz"
version_available = ["disgenet_befree_gene_disease", "disgenet_befree_rs_disease", "disgenet_curated_gene_disease", "disgenet_curated_variant_disease", "disgenet_gene_disease", "disgenet_pubannotator_variant_disease", "disgenet_rs_disease"]
buildver_available = ["hg19", "hg38"]
description = "See http://www.disgenet.org/web/DisGeNET/menu/downloads"

[db_annovar_cancer_hotspots]
source_url = "http://bioinfo.rjh.com.cn/download/annovarR/humandb/{{version}}.txt.gz"
version_available = ["cancer_hotspots_v2"]
buildver_available = ["hg19", "hg38"]
description = "See http://cancerhotspots.org/#/home Hotspot Results V2 sheet1"

[db_annovar_abraom]
source_url = ["http://www.openbioinformatics.org/annovar/download/{{buildver}}_{{version}}.txt.gz"]
version_available = ["abraom"]
buildver_available = ["hg19", "hg38"]
description = "abraom: 2.3 million [Brazilian genomic variants](https://www.ncbi.nlm.nih.gov/pubmed/28332257)"