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README.md

TEMP

TEMP is a software package for detecting transposable elements (TEs) insertions and absences from pooled high-throughput sequencing data

Current version v1.05

Sep 24th 2016 Update: Remove the dependency on samtools view -X option. Now TEMP works for newer versions of samtools (1.x) as well.

Author: Jiali Zhuang (jiali.zhuang@umassmed.edu) and Jie Wang (jie.wangj@umassmed.edu) Weng Lab, University of Massachusetts Medical School, Worcester, MA, USA

For TE insertion analysis run TEMP_Insertion.sh in script. For TE absence analysis run TEMP_Absence.sh in script.

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TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data

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