From d580e2aaf5c6dcc010209f805d1a6fa0a04fde7e Mon Sep 17 00:00:00 2001
From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com>
Date: Mon, 10 Nov 2025 05:46:05 +0000
Subject: [PATCH] Update python-machine-learning-libs

---
 conda-environment.yml | 4 ++--
 requirements.txt      | 6 +++---
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/conda-environment.yml b/conda-environment.yml
index 1b37b6034..37d478665 100644
--- a/conda-environment.yml
+++ b/conda-environment.yml
@@ -16,14 +16,14 @@ dependencies:
   - pip=25.0.1
   - setuptools=80.9.0 # opentsne uses sklearn.base uses joblib uses distutils missing in Python >= 12 (TODO use native openTSNE?) 
   - typing-extensions=4.12.2 # Also needed for opentsne and Python >= 3.12
-  - opentsne=1.0.2 # to visualize node embeddings in 2D (t-SNE dimensionality reduction)
+  - opentsne=1.0.4 # to visualize node embeddings in 2D (t-SNE dimensionality reduction)
   - wordcloud=1.9.4
   - monotonic=1.6
   - plotly=6.3.1
   - python-kaleido=1.0.0 # To render plotly plots. Static image export for web-based visualization libraries.
   - scikit-learn=1.6.1 # For anomaly detection HDBSCAN clustering, scores like AMI, and others 
   - seaborn=0.13.2 # To visualize clustering results
-  - optuna=4.5.0
+  - optuna=4.6.0
   - umap-learn=0.5.9 # to visualize node embeddings in 2D (UMAP dimensionality reduction)
   - shap=0.48.0
   - pip:
diff --git a/requirements.txt b/requirements.txt
index 161c7550c..abbdf8dc4 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -21,7 +21,7 @@ seaborn==0.13.2 # To visualize clustering results
 
 # --- Machine Learning / Optimization ---
 scikit-learn==1.7.2
-optuna==4.5.0
+optuna==4.6.0
 umap-learn==0.5.9.post2 # Dimensionality reduction to visualize node embeddings in 2D
 
 # --- Database connector ---
@@ -29,5 +29,5 @@ neo4j==5.28.2
 
 # --- Native/scientific packages (may require compilation) ---
 # These are included but may cause install errors in pip/venv
-opentsne==1.0.2       # Dimensionality reduction to visualize node embeddings in 2D. Might get replaced by umap.
-shap==0.48.0          # For e.g. explaining anomaly detection results
\ No newline at end of file
+opentsne==1.0.4       # Dimensionality reduction to visualize node embeddings in 2D. Might get replaced by umap.
+shap==0.49.1          # For e.g. explaining anomaly detection results
\ No newline at end of file