diff --git a/README.md b/README.md index 564a16d61..1140aa41a 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,11 @@ -Contained within this repository is a comprehensive and automated code graph analysis pipeline. While initially designed to support Java through the utilization of [jQAssistant](https://jqassistant.github.io/jqassistant/current), it now also [supports Typescript](https://github.com/jqassistant-plugin/jqassistant-typescript-plugin) and is open to extension for further programming languages. The graph database [Neo4j](https://neo4j.com) serves as the foundation for storing and querying the graph, which encompasses all the structural intricacies of the analyzed code. Additionally, Neo4j's [Graph Data Science](https://neo4j.com/product/graph-data-science) provides additional algorithms like community detection to analyze the code structure. The generated reports offer flexibility, ranging from simple query results presented as CSV files to more elaborate Jupyter Notebooks converted to Markdown or PDF formats. +This repository provides an automated code graph analysis pipeline built on [jQAssistant](https://jqassistant.github.io/jqassistant/current) and [Neo4j](https://neo4j.com). It supports Java and experimental TypeScript analysis, capturing both the structure and evolution of your code base. + +Ever wondered which libraries matter most, how your modules build on each other, which parts have few contributors, which files change together, or where structural anomalies emerge? + +This project helps uncover such patterns through graph-based analysis, visualization, and machine learning — offering hundreds of expert-level reports for deep code insights. --- @@ -28,11 +32,15 @@ Contained within this repository is a comprehensive and automated code graph ana ### :newspaper: News +- November 2025: Removed deprecated (since version 2.x) "graph-visualization" node package +- November 2025: Treemap charts for anomalies and archetypes +- October 2025: Graph visualizations for anomaly archetypes +- October 2025: Anomaly archetypes with markdown summary - August 2025: Association rule learning for co-changing files in git history - August 2025: Anomaly detection powered by unsupervised machine learning and explainable AI - May 2025: Migrated to [Neo4j 2025.x](https://neo4j.com/docs/upgrade-migration-guide/current/version-2025/upgrade) and Java 21. -### :notebook: Jupyter Notebook Reports +### :notebook: Jupyter Notebook and Python Reports Here is an overview of [Jupyter Notebooks](https://jupyter.org) reports from [code-graph-analysis-examples](https://github.com/JohT/code-graph-analysis-examples). For a complete list, see the [Jupyter Notebook Report Reference](#page_with_curl-jupyter-notebook-report-reference). @@ -45,6 +53,7 @@ Here is an overview of [Jupyter Notebooks](https://jupyter.org) reports from [co - [Overview](https://github.com/JohT/code-graph-analysis-examples/blob/main/analysis-results/AxonFramework/latest/overview-java/OverviewJava.md) contains overall statistics and details about methods and their complexity. ([Notebook](./jupyter/OverviewJava.ipynb)). - [Visibility Metrics](https://github.com/JohT/code-graph-analysis-examples/blob/main/analysis-results/AxonFramework/latest/visibility-metrics-java/VisibilityMetricsJava.md) ([Notebook](./jupyter/VisibilityMetricsJava.ipynb)). - [Wordcloud](https://github.com/JohT/code-graph-analysis-examples/blob/main/analysis-results/AxonFramework/latest/wordcloud/Wordcloud.md) contains a visual representation of package and class names ([Notebook](./jupyter/Wordcloud.ipynb)). +- [Java Archetypes Treemap](https://github.com/JohT/code-graph-analysis-examples/blob/main/analysis-results/AxonFramework/latest/anomaly-detection/JavaTreemap2ArchetypesOverviewPerDirectory.svg) ([Python Script](./domains/anomaly-detection/treemapVisualizations.py)) ### :blue_book: Graph Data Science Reports @@ -65,6 +74,7 @@ Here are some fully automated graph visualizations utilizing [GraphViz](https:// - [Java Artifact Build Levels](https://github.com/JohT/code-graph-analysis-examples/blob/main/analysis-results/AxonFramework/latest/internal-dependencies-visualization/JavaArtifactBuildLevels.svg) ([Query](./cypher/Internal_Dependencies/Java_Artifact_build_levels_for_graphviz.cypher), [Source Script](./scripts/visualization/visualizeQueryResults.sh)) - [Java Artifact Longest Path Contributors](https://github.com/JohT/code-graph-analysis-examples/blob/main/analysis-results/AxonFramework/latest/path-finding-visualization/JavaArtifactLongestPaths.svg) ([Query](./cypher/Path_Finding/Path_Finding_6_Longest_paths_contributors_for_graphviz.cypher), [Source Script](./scripts/visualization/visualizeQueryResults.sh)) +- [Java Package Top #1 Authority Archetype and contributing packages](https://github.com/JohT/code-graph-analysis-examples/blob/main/analysis-results/AxonFramework/latest/anomaly-detection/Java_Package/GraphVisualizations/TopAuthority1.svg) ([Query](./domains/anomaly-detection/labels/AnomalyDetectionArchetypeAuthority.cypher), [Source Script](./domains/anomaly-detection/graphs/anomalyDetectionGraphs.sh)) ## :book: Blog Articles @@ -93,13 +103,6 @@ Here are some fully automated graph visualizations utilizing [GraphViz](https:// - To use venv, no additional installation is needed. For that the environment variable `USE_VIRTUAL_PYTHON_ENVIRONMENT_VENV` needs to be set to `'true'`. - Chromium will automatically be downloaded if needed for Jupyter Notebook PDF reports generation. -### Additional Prerequisites for Graph Visualization - -These tools are needed to run the graph visualization scripts of directory [scripts/visualization/](./scripts/visualization/) and the deprecated scripts in [graph-visualization](./graph-visualization): - -- [Node.js](https://nodejs.org/en) -- [npm](https://docs.npmjs.com/about-npm) - ### Additional Prerequisites for Windows - Add this line to your `~/.bashrc` file if you are using Anaconda3: `/c/ProgramData/Anaconda3/etc/profile.d/conda.sh`. Try to find a similar script for other conda package managers or versions. @@ -158,7 +161,6 @@ The [Code Structure Analysis Pipeline](./.github/workflows/internal-java-code-an - [scikit-learn](https://scikit-learn.org) - [optuna](https://optuna.org) - [SHAP](https://github.com/shap/shap) -- [Graph Visualization](./graph-visualization/README.md) uses [node.js](https://nodejs.org/de) and the dependencies listed in [package.json](./graph-visualization/package.json). - [HPCC-Systems (High Performance Computing Cluster) Web-Assembly (JavaScript)](https://github.com/hpcc-systems/hpcc-js-wasm) containing a wrapper for GraphViz to visualize graph structures. - [GraphViz](https://gitlab.com/graphviz/graphviz) for CLI Graph Visualization - [Check links in markdown documentation (GitHub workflow)](./.github/workflows/internal-check-links-in-documentation.yml) uses [markdown-link-check](https://github.com/tcort/markdown-link-check). diff --git a/graph-visualization/.nvmrc b/graph-visualization/.nvmrc deleted file mode 100644 index 41106da8f..000000000 --- a/graph-visualization/.nvmrc +++ /dev/null @@ -1 +0,0 @@ -23.11.1 \ No newline at end of file diff --git a/graph-visualization/DEPRECATED.md b/graph-visualization/DEPRECATED.md deleted file mode 100644 index 02f64d5f3..000000000 --- a/graph-visualization/DEPRECATED.md +++ /dev/null @@ -1,5 +0,0 @@ -# Render Graph Visualizations (Deprecated) - -:warning: **This package is deprecated and might get removed in future.** :warning: - -Visualizations are now done using [GraphViz](https://graphviz.org). Please use the new script [visualizeQueryResults.sh](./../scripts/visualization/visualizeQueryResults.sh) like it is done in [InternalDependenciesVisualization.sh](./../scripts/reports/InternalDependenciesVisualization.sh) to create Graph Visualizations. diff --git a/graph-visualization/README.md b/graph-visualization/README.md deleted file mode 100644 index 53953de24..000000000 --- a/graph-visualization/README.md +++ /dev/null @@ -1,42 +0,0 @@ -# Render Graph Visualizations (Deprecated) - -:warning: **This package is deprecated and might get removed in future.** :warning: - -Visualizations are now done using [GraphViz](https://graphviz.org). Please use the new script [visualizeQueryResults.sh](./../scripts/visualization/visualizeQueryResults.sh) like it is done in [InternalDependenciesVisualization.sh](./../scripts/reports/InternalDependenciesVisualization.sh) to create Graph Visualizations. - -This [node.js](https://nodejs.org/de) project provides the script [renderVisualizations.js](./renderVisualizations.js) to render graph visualizations as image files. It shows how to use [Puppeteer](https://pptr.dev) to render HTML5 Canvas elements as images, -jimp to manipulate images and neovis to visualize Neo4j Graphs. - -## Prerequisites - -- Run `npm ci` in this directory to download all necessary dependencies. - -## How it works - -[renderVisualizations.js](./renderVisualizations.js) uses these three steps: - -- Opens every HTML file in this directory and its subdirectories with [Puppeteer](https://pptr.dev) in a headless browser -- Takes screenshots of all contained [HTML5 Canvas elements](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/canvas?retiredLocale=de) -- Creates a directory with the name of the HTML converted to snake case in the current directory -- Saves all screenshots as [PNG](https://en.wikipedia.org/wiki/PNG) files into that newly created directory - -## How to run it in the CLI - -Under the assumption that your current working directory is `temp/projectname/reports/graph-visualizations` in the root directory of this repository, then the command would look like this: - -```shell -node ./../../../../graph-visualization/renderVisualizations -``` - -## How to open it in the browser - -- Open one of the HTML files in the Browser using `file://` prefix followed by the full path or using a Live Server. -- Enter the password for the local Neo4j database `neo4j` that you have chosen as initial password. -- Wait until the orange frames turn green and use drag'n'drop or scrolling to see the part of the Graph you're interested in. -- Currently, the frames are intentionally very large to get a practicable resolution for saving the images. This might get refined in future. - -## Scripts - -- [renderVisualizations.js](./renderVisualizations.js) is the main Node.js script that renders the Graph Visualizations using a Command Line Interface (CLI) -- [vis-configuration-presets.js](./vis-configuration-presets.js) contains functions that return predefined visualization configurations. Currently (May 2024), there is only one configuration for visualizing hierarchical, topology sorted Graphs. -- [visualization-pagination.js](./visualization-pagination.js) provides pagination for visualizing large Graphs by splitting them up into smaller Subgraphs all in separate images. \ No newline at end of file diff --git a/graph-visualization/index.css b/graph-visualization/index.css deleted file mode 100644 index 7487611e2..000000000 --- a/graph-visualization/index.css +++ /dev/null @@ -1,36 +0,0 @@ -div { - width: 100vw; - height: 100vh; -} - -div.vis-tooltip { - font-size: 4px; - overflow-y: auto; -} - -.indexedVisualization { - margin-top: 10px; - margin-left: 10px; - width: 400vw; - height: 400vh; - display:inline-block; -} - -.indexedVisualization.visualization-finished { - border-width: 1px; - border-style: solid; - border-color: lightgreen; -} - -.indexedVisualization:not(.visualization-finished) { - border-width: 2px; - border-style: dotted; - border-color: orange; -} - -.indexedVisualization.visualization-finished.visualization-failed { - height: 6em; - border-width: 2px; - border-style: solid; - border-color: red; -} diff --git a/graph-visualization/java-artifact-dependencies/graphVisualizationJavaArtifactDependencies.html b/graph-visualization/java-artifact-dependencies/graphVisualizationJavaArtifactDependencies.html deleted file mode 100644 index 7af756231..000000000 --- a/graph-visualization/java-artifact-dependencies/graphVisualizationJavaArtifactDependencies.html +++ /dev/null @@ -1,28 +0,0 @@ - - - - - - - - - Java Artifact Dependencies Graph Visualization with neovis.js - - - - - - - - - - - - - - - -
- - - \ No newline at end of file diff --git a/graph-visualization/java-artifact-dependencies/graphVisualizationJavaArtifactDependencies.js b/graph-visualization/java-artifact-dependencies/graphVisualizationJavaArtifactDependencies.js deleted file mode 100644 index 018bbee2a..000000000 --- a/graph-visualization/java-artifact-dependencies/graphVisualizationJavaArtifactDependencies.js +++ /dev/null @@ -1,55 +0,0 @@ -function getNeo4jCredentials() { - return { - serverUrl: "bolt://localhost:7687", - serverUser: "neo4j", - serverPassword: document.getElementById("neo4j-server-password").value, - }; -} - -function getConfiguration(credentials, visConfiguration, containerId = "visualizations") { - return { - containerId: containerId, - neo4j: credentials, - visConfig: visConfiguration, - // Note: "defaultLabelConfig" is used instead of named label configs: { NameOfTheLabel: {...}, ...} - // The reason for that is that neovis.js takes the first label that is returned by Neo4j. - // If there are multiple Labels this is not stable to use. - // Since we only expect one type of labels here (homogenous graph) we can simply use the default label config. - // Reference: https://github.com/neo4j-contrib/neovis.js/blob/cef0aa16d647ffe0fd9ca457bcffa6e0cb7c55c8/src/neovis.ts#L524 - defaultLabelConfig: { - [NeoVis.NEOVIS_ADVANCED_CONFIG]: { - function: { - // Print all properties for the title (when nodes are clicked) - title: NeoVis.objectToTitleHtml, - // Use "fileName" as label. Remove leading slash, trailing ".jar", version number and a trailing word like "Final". - label: (node) => - node.properties.fileName - .replace("/", "") - .replace(".jar", "") - .replace(/[\d\.\-\_v]+\w+$/gm, "") + - "(" + - node.properties.maxDistanceFromSource + - ")", - }, - }, - }, - relationships: { - DEPENDS_ON: { - label: false, - value: "weight", - [NeoVis.NEOVIS_ADVANCED_CONFIG]: { - function: { - title: NeoVis.objectToTitleHtml, - }, - }, - }, - }, - initialCypher: - "MATCH (artifact:Artifact)-[dependency:DEPENDS_ON*0..1]->(dependent:Artifact) WHERE artifact.topologicalSortIndex >= 0 AND dependent.topologicalSortIndex >= 0 AND artifact <> dependent RETURN artifact,dependency,dependent ORDER BY dependent.topologicalSortIndex, artifact.topologicalSortIndex SKIP toInteger($startIndex) LIMIT toInteger($blockSize)", - }; -} - -function draw() { - const config = getConfiguration(getNeo4jCredentials(), hierarchicalHexagons()); - paginatedGraphVisualization({ containerElementId: "visualizations", neoVizConfiguration: config }); -} diff --git a/graph-visualization/package-lock.json b/graph-visualization/package-lock.json deleted file mode 100644 index 87fa93dbc..000000000 --- a/graph-visualization/package-lock.json +++ /dev/null @@ -1,2894 +0,0 @@ -{ - 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"main": "renderVisualization.js", - "type": "module", - "scripts": { - "test": "echo \"Error: no test specified\" && exit 1" - }, - "author": "JohT", - "license": "MIT", - "dependencies": { - "glob": "11.0.3", - "jimp": "1.6.0", - "neovis.js": "2.1.0", - "puppeteer": "24.29.1" - } -} diff --git a/graph-visualization/renderVisualizations.js b/graph-visualization/renderVisualizations.js deleted file mode 100644 index e8e13956e..000000000 --- a/graph-visualization/renderVisualizations.js +++ /dev/null @@ -1,152 +0,0 @@ -import puppeteer, { Browser } from "puppeteer"; -import { basename, dirname } from "path"; -import { globSync } from "glob"; -import { existsSync, mkdirSync, writeFileSync } from "fs"; -import { Jimp, JimpMime } from "jimp"; - -// __filename and __dirname don't exist when using es6 modules. -// So they will be derived from the nodejs command line argument index 1 (script filename). -const indexOfScriptFilePathArgument = 1; -const __filename = process.argv[indexOfScriptFilePathArgument]; -const __dirname = dirname(__filename); -console.log(`renderVisualizations.js: dirname=${__dirname}`); - -/** - * Crops the image in the buffer so that there is no empty frame around it. - * @param {Buffer} buffer - * @returns Buffer - */ -const autoCropImageBuffer = async (buffer) => { - return await Jimp - .read(buffer) - .then((image) => image.autocrop()) - .then((image) => image.getBuffer(JimpMime.png)); -}; - -/** - * Converts a camel case string into an kebab case string separated with dashes. - * Reference: {@link https://stackoverflow.com/questions/54246477/how-to-convert-camelcase-to-snake-case} - * @param {string} str - * @returns string - */ -const camelToKebabCase = (str) => str.replace(/[A-Z]/g, (letter) => `-${letter.toLowerCase()}`); - -/** - * Take a screenshot after an error happened. - * - * @param {string} htmlFilename - * @param {string} reason - */ -const makeScreenshotOfError = async (page, htmlFilename, reason) => { - const reportName = basename(htmlFilename, ".html"); - const directoryName = camelToKebabCase(reportName); - console.log(`Taking an error screenshot of report ${reportName}. Reason: ${reason}`); - await page.screenshot({ path: `./${directoryName}/error-${reportName}-${reason}.png`, omitBackground: false }); -}; - -/** - * Handle a catched error by taking a screenshot. - * - * @param {string} htmlFilename - * @param {string} reason - * @return - */ -const handleErrorWithScreenshot = (page, htmlFilename, reason) => async (error) => { - await makeScreenshotOfError(page, htmlFilename, reason); - throw new Error(error); -}; -/** - * Creates a new page and takes a screenshot of all canvas tags that are contained within a div. - * Note: Don't run this in parallel. See https://github.com/puppeteer/puppeteer/issues/1479 - * @param {Browser} browser - * @param {string} htmlFilename - */ -const takeCanvasScreenshots = async (browser, htmlFilename) => { - const reportName = basename(htmlFilename, ".html"); - const directoryName = camelToKebabCase(reportName); - if (!existsSync(directoryName)) { - mkdirSync(directoryName); - } - - const page = await browser.newPage(); - page.on("requestfailed", (request) => console.log(`${request.failure().errorText} ${request.url()}`)); - await page.setViewport({ width: 1500, height: 1000, isMobile: false, isLandscape: true, hasTouch: false, deviceScaleFactor: 1 }); - - console.log(`Loading ${htmlFilename}`); - await page.goto(`file://${htmlFilename}`); - - if (!process.env.NEO4J_INITIAL_PASSWORD) { - throw new Error("Missing environment variable NEO4J_INITIAL_PASSWORD"); - } - // Login with Neo4j server password from the environment variable NEO4J_INITIAL_PASSWORD - const loginButton = await page.waitForSelector("#neo4j-server-login"); - await page.type("#neo4j-server-password", process.env.NEO4J_INITIAL_PASSWORD); - await loginButton.click(); - - // Wait for the graph visualization to be rendered onto a HTML5 canvas - console.log(`Waiting for visualizations to be finished`); - await page - .waitForSelector(".visualization-finished", { timeout: 90_000 }) - .catch(handleErrorWithScreenshot(page, htmlFilename, "visualization-did-not-finish")); - - // Get all HTML canvas tag elements - const canvasElements = await page.$$("canvas"); - if (canvasElements.length <= 0) { - await makeScreenshotOfError(page, htmlFilename, "no-canvas-found"); - } - console.log(`Found ${canvasElements.length} visualizations`); - - // Take a png screenshot of every canvas element and save them with increasing indices - await Promise.all( - Array.from(canvasElements).map(async (canvasElement, index) => { - console.log(`Exporting image ${reportName}-${index}.png...`); - const dataUrl = await page.evaluate(async (canvasElement) => { - return canvasElement.toDataURL(); - }, canvasElement); - let data = Buffer.from(dataUrl.split(",").pop(), "base64"); - console.log(`Cropping image ${reportName}-${index}.png...`); - data = await autoCropImageBuffer(data).catch(handleErrorWithScreenshot(page, htmlFilename, `failed-to-crop-image-${index}`)); - writeFileSync(`./${directoryName}/${reportName}-${index}.png`, data); - }) - ); -}; - -let browser; -/** - * Main code that launches puppeteer in a headless browser, - * iterates over all HTML files in this directory and its subdirectories - * and takes a screenshot of the canvas elements using {@link takeCanvasScreenshots}. - */ -(async () => { - console.log("renderVisualizations.js: Starting headless browser..."); - browser = await puppeteer.launch({ - headless: "new", - dumpio: true, - args: [ - "--enable-logging", - "--disable-search-engine-choice-screen", - "--ash-no-nudges", - "--no-first-run", - "--no-default-browser-check", - "--hide-scrollbars", - "--disable-features=Translate", - "--disable-features=InterestFeedContentSuggestions", - "--disable-extensions", - "--disable-default-apps", - "--disable-component-extensions-with-background-pages", - "--disable-client-side-phishing-detection", - "--use-gl=disabled", - "--disable-features=Vulkan", - "--no-sandbox" // See https://pptr.dev/troubleshooting#issues-with-apparmor-on-ubuntu - ], - }); // { headless: false } for testing - - // Get all *.html files in this (script) directory and its subdirectories - // The separate filter is needed to ignore the "node_modules" directory. - // Glob's build-in filter doesn't seem to work on Windows. - const htmlFiles = globSync(`${__dirname}/**/*.html`, { absolute: true }).filter((file) => !file.includes("node_modules")); - for (const htmlFile of htmlFiles) { - await takeCanvasScreenshots(browser, htmlFile); - } - console.log(`renderVisualizations.js: Successfully rendered ${htmlFiles.length} html file(s)`); -})().finally(() => browser?.close()); diff --git a/graph-visualization/typescript-module-dependencies/graphVisualizationTypescriptModuleDependencies.html b/graph-visualization/typescript-module-dependencies/graphVisualizationTypescriptModuleDependencies.html deleted file mode 100644 index 26a5b1c0c..000000000 --- a/graph-visualization/typescript-module-dependencies/graphVisualizationTypescriptModuleDependencies.html +++ /dev/null @@ -1,28 +0,0 @@ - - - - - - - - - Typescript Module Dependencies Graph Visualization with neovis.js - - - - - - - - - - - - - - - -
- - - \ No newline at end of file diff --git a/graph-visualization/typescript-module-dependencies/graphVisualizationTypescriptModuleDependencies.js b/graph-visualization/typescript-module-dependencies/graphVisualizationTypescriptModuleDependencies.js deleted file mode 100644 index 2fa2ab66e..000000000 --- a/graph-visualization/typescript-module-dependencies/graphVisualizationTypescriptModuleDependencies.js +++ /dev/null @@ -1,50 +0,0 @@ -function getNeo4jCredentials() { - return { - serverUrl: "bolt://localhost:7687", - serverUser: "neo4j", - serverPassword: document.getElementById("neo4j-server-password").value, - }; -} - -function getConfiguration(credentials, visConfiguration, containerId = "visualizations") { - return { - containerId: containerId, - neo4j: credentials, - visConfig: visConfiguration, - // Note: "defaultLabelConfig" is used instead of named label configs: { NameOfTheLabel: {...}, ...} - // The reason for that is that neovis.js takes the first label that is returned by Neo4j. - // If there are multiple Labels this is not stable to use. - // Since we only expect one type of labels here (homogenous graph) we can simply use the default label config. - // Reference: https://github.com/neo4j-contrib/neovis.js/blob/cef0aa16d647ffe0fd9ca457bcffa6e0cb7c55c8/src/neovis.ts#L524 - defaultLabelConfig: { - [NeoVis.NEOVIS_ADVANCED_CONFIG]: { - function: { - // Print all properties for the title (when nodes are clicked) - title: NeoVis.objectToTitleHtml, - // Use "name" as label. Remove file extension. Add dependency level (maxDistanceFromSource) in parentheses. - label: (node) => { - return node.properties.name.replace(/\.\w+$/gm, "") + "(" + node.properties.maxDistanceFromSource + ")"; - }, - }, - }, - }, - relationships: { - DEPENDS_ON: { - label: false, - value: "cardinality", - [NeoVis.NEOVIS_ADVANCED_CONFIG]: { - function: { - title: NeoVis.objectToTitleHtml - }, - } - }, - }, - initialCypher: - "MATCH (module:TS:Module)-[dependency:DEPENDS_ON*0..1]->(dependent:TS:Module) WHERE module.topologicalSortIndex >= 0 AND dependent.topologicalSortIndex >= 0 AND module <> dependent RETURN module,dependency,dependent ORDER BY dependent.topologicalSortIndex, module.topologicalSortIndex SKIP toInteger($startIndex) LIMIT toInteger($blockSize)", - }; -} - -function draw() { - const config = getConfiguration(getNeo4jCredentials(), hierarchicalHexagons()); - paginatedGraphVisualization({ containerElementId: "visualizations", neoVizConfiguration: config }); -} diff --git a/graph-visualization/vis-configuration-presets.js b/graph-visualization/vis-configuration-presets.js deleted file mode 100644 index 47d48a28a..000000000 --- a/graph-visualization/vis-configuration-presets.js +++ /dev/null @@ -1,45 +0,0 @@ -function hierarchicalHexagons() { - return { - nodes: { - shape: "hexagon", - shadow: false, - font: { - strokeWidth: 4, - strokeColor: "#F2F2FF", - size: 11, - }, - size: 22, - widthConstraint: { - maximum: 60, - }, - }, - edges: { - arrows: { - to: { - enabled: true, - scaleFactor: 0.5, - }, - }, - scaling: { - max: 8, - }, - }, - physics: { - hierarchicalRepulsion: { - nodeDistance: 200, // 100 - centralGravity: 0.5, // 0.2 - springLength: 200, // 200 - springConstant: 0.06, // 0.05 - damping: 0.09, // 0.09 - avoidOverlap: 1, // 0 - }, - solver: "hierarchicalRepulsion", // barnesHut - }, - layout: { - hierarchical: { - enabled: true, - sortMethod: "directed", - }, - }, - }; -} diff --git a/graph-visualization/visualization-pagination.js b/graph-visualization/visualization-pagination.js deleted file mode 100644 index 681d12ce5..000000000 --- a/graph-visualization/visualization-pagination.js +++ /dev/null @@ -1,91 +0,0 @@ -/** - * Splits a large Graph into multiple smaller ones with query pagination to be able visualize them. - * Uses {@link https://github.com/neo4j-contrib/neovis.js|neovis.js} - * on top of {@link https://visjs.github.io/vis-network/docs/network/|vis-network.js}. - * - * @param {Object} parameters - The parameters for the paginated visualization using neovis.js on top of vis-network.js. - * @param {string} parameters.containerElementId - The id of the main container element (typically a div) where all visualizations will be drawn into. - * @param {Object} parameters.neoVizConfiguration - {@link https://neo4j-contrib.github.io/neovis.js/interfaces/NeovisConfig.html|NeovisConfig} object. The containerId will be overwritten so it can be left out or filled with an empty string. - * @param {string} [parameters.maxVisualizations=100] - Maximal number of visualizations (pages) - * @param {string} [parameters.recordsPerVisualization=160] - Maximal numbers of records per visualization (page/block size) - * @param {string} [parameters.idPrefixOfIndexedVisualizationElement="vis"] - Element id prefix for every indexed visualization element. It is then followed by the index number. - * @param {string} [parameters.classOfIndexedVisualizationElement="indexedVisualization"] - CSS class name for every indexed visualization element - * @param {string} [parameters.classOfFinishedVisualization="visualization-finished"] - CSS class name for finished visualizations (might be successful or failed) - * @param {string} [parameters.classOfFailedVisualization="visualization-failed"] - CSS class name for failed visualizations containing an error message - */ -function paginatedGraphVisualization({ - containerElementId, - neoVizConfiguration, - maxVisualizations = 100, - recordsPerVisualization = 160, - idPrefixOfIndexedVisualizationElement = "vis", - classOfIndexedVisualizationElement = "indexedVisualization", - classOfFinishedVisualization = "visualization-finished", - classOfFailedVisualization = "visualization-failed", -}) { - /** - * Marks the given element as finished when the visualization is completed. - * @param {Element} indexedVisualizationElement - * @param {string} logDescription - */ - function markVisualizationAsFinished(indexedVisualizationElement, logDescription) { - indexedVisualizationElement.classList.add(classOfFinishedVisualization); - const unfinishedVisualizations = document.querySelectorAll(`.${classOfIndexedVisualizationElement}:not(.${classOfFinishedVisualization})`); - if (unfinishedVisualizations.length === 0) { - console.debug(`${logDescription}: Last visualization finished on element ${JSON.stringify(indexedVisualizationElement)}.`); - if (indexedVisualizationElement.parentElement) { - console.debug(`${logDescription}: Mark whole visualization as finished on parent element ${JSON.stringify( indexedVisualizationElement.parentElement)}`); - indexedVisualizationElement.parentElement.classList.add(classOfFinishedVisualization); - } - } - } - - const containerElement = document.getElementById(containerElementId); - - for (let index = 0; index < maxVisualizations; index++) { - const indexedVisualizationContainer = document.createElement("div"); - indexedVisualizationContainer.id = `${idPrefixOfIndexedVisualizationElement}-${index}`; - indexedVisualizationContainer.classList.add(classOfIndexedVisualizationElement); - containerElement.appendChild(indexedVisualizationContainer); - - const config = { ...neoVizConfiguration, containerId: indexedVisualizationContainer.id }; - const neoViz = new NeoVis.default(config); - - neoViz.registerOnEvent(NeoVis.NeoVisEvents.CompletionEvent, (event) => { - if (event.recordCount == 0) { - if (index === 0) { - const message = 'No query results. Nothing to visualize. Check the query and if the nodes and properties have been written.'; - console.warn(message) - indexedVisualizationContainer.classList.add(classOfFailedVisualization); - indexedVisualizationContainer.textContent = message; - } else { - indexedVisualizationContainer.remove(); // remove an empty canvas - } - markVisualizationAsFinished(indexedVisualizationContainer, 'No query results (anymore)'); - } else { - setTimeout(() => { - neoViz.stabilize(); - markVisualizationAsFinished(indexedVisualizationContainer, 'Visualization stabilized'); - }, 5000); - } - }); - neoViz.registerOnEvent(NeoVis.NeoVisEvents.ErrorEvent, (event) => { - indexedVisualizationContainer.classList.add(classOfFailedVisualization); - indexedVisualizationContainer.textContent = event.error.message; - console.error(`Visualization Error: ${JSON.stringify(event.error)}`) - markVisualizationAsFinished(indexedVisualizationContainer, 'Error event'); - }); - neoViz.registerOnEvent(NeoVis.NeoVisEvents.ClickNodeEvent, (event) => { - console.debug(`Clicked on node: ${JSON.stringify(event.node, undefined, 2)}`) - }); - neoViz.registerOnEvent(NeoVis.NeoVisEvents.ClickEdgeEvent, (event) => { - console.debug(`Clicked on edge: ${JSON.stringify(event.edge, undefined, 2)}`) - }); - const parameters = { - blockSize: recordsPerVisualization, - startIndex: index * recordsPerVisualization, - endIndex: (index + 1) * recordsPerVisualization, - }; - neoViz.render(undefined, parameters); - } -} diff --git a/scripts/reports/GraphVisualization.sh b/scripts/reports/GraphVisualization.sh deleted file mode 100755 index 6729a1a9f..000000000 --- a/scripts/reports/GraphVisualization.sh +++ /dev/null @@ -1,41 +0,0 @@ -#!/usr/bin/env bash - -# DEPRECATED: Creates the "graph-visualization" report using the (now deprecated) nodejs project "graph-visualization". -# It contains the hierarchical artifact dependencies graph - -# Requires executeJupyterNotebook.sh - -# Fail on any error ("-e" = exit on first error, "-o pipefail" exist on errors within piped commands) -set -o errexit -o pipefail - -echo "GraphVisualization: Graph Visualization with the nodejs project 'graph-visualization' is deprecated and will be skipped." -return 0 - -# Overrideable Constants (defaults also defined in sub scripts) -REPORTS_DIRECTORY=${REPORTS_DIRECTORY:-"reports"} - -## Get this "scripts/reports" directory if not already set -# Even if $BASH_SOURCE is made for Bourne-like shells it is also supported by others and therefore here the preferred solution. -# CDPATH reduces the scope of the cd command to potentially prevent unintended directory changes. -# This way non-standard tools like readlink aren't needed. -REPORTS_SCRIPT_DIR=${REPORTS_SCRIPT_DIR:-$( CDPATH=. cd -- "$(dirname -- "${BASH_SOURCE[0]}")" && pwd -P )} -echo "GraphVisualization: REPORTS_SCRIPT_DIR=${REPORTS_SCRIPT_DIR}" - -# Get the "scripts" directory by taking the path of this script and going one directory up. -SCRIPTS_DIR=${SCRIPTS_DIR:-"${REPORTS_SCRIPT_DIR}/.."} # Repository directory containing the shell scripts -echo "GraphVisualization: SCRIPTS_DIR=${SCRIPTS_DIR}" - -# Get the "graph-visualization" directory by taking the path of this script and going two directory up and then to "visualization". -GRAPH_VISUALIZATION_DIRECTORY=${GRAPH_VISUALIZATION_DIRECTORY:-"${SCRIPTS_DIR}/../graph-visualization"} # Repository directory containing the Jupyter Notebooks -echo "GraphVisualization: GRAPH_VISUALIZATION_DIRECTORY=${GRAPH_VISUALIZATION_DIRECTORY}" - -# Execute "npm ci" to get all required node modules from npm package manager -if [ ! -d "${GRAPH_VISUALIZATION_DIRECTORY}/node_modules" ] ; then - echo "GraphVisualization: Resolving node_modules..." - (cd "${GRAPH_VISUALIZATION_DIRECTORY}" && exec npm ci) -fi - -# Execute the node.js script to render the graph visualizations as image files -(cd "${REPORTS_DIRECTORY}" && exec node "${GRAPH_VISUALIZATION_DIRECTORY}/renderVisualizations.js") - -echo "GraphVisualization: Successfully finished" \ No newline at end of file