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README.md

LightGraphs

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LightGraphs LightGraphs LightGraphs LightGraphs

An optimized graphs package.

Simple graphs (not multi- or hypergraphs) are represented in a memory- and time-efficient manner with adjacency lists and edge iterators. Both directed and undirected graphs are supported via separate types, and conversion is available from directed to undirected.

The project goal is to mirror the functionality of robust network and graph analysis libraries such as NetworkX while being simpler to use and more efficient than existing Julian graph libraries such as Graphs.jl. It is an explicit design decision that any data not required for graph manipulation (attributes and other information, for example) is expected to be stored outside of the graph structure itself. Such data lends itself to storage in more traditional and better-optimized mechanisms.

Additional functionality may be found in the companion package LightGraphsExtras.jl.

Documentation

Full documentation is available at GitHub Pages. Documentation for methods is also available via the Julia REPL help system. Additional tutorials can be found at JuliaGraphsTutorials.

Core Concepts

A graph G is described by a set of vertices V and edges E: G = {V, E}. V is an integer range 1:n; E is represented as forward (and, for directed graphs, backward) adjacency lists indexed by vertices. Edges may also be accessed via an iterator that yields Edge types containing (src<:Integer, dst<:Integer) values. Both vertices and edges may be integers of any type, and the smallest type that fits the data is recommended in order to save memory.

LightGraphs.jl provides two graph types: Graph is an undirected graph, and DiGraph is its directed counterpart.

Graphs are created using Graph() or DiGraph(); there are several options (see the tutorials for examples).

Multiple edges between two given vertices are not allowed: an attempt to add an edge that already exists in a graph will result in a silent failure.

Installation

Installation is straightforward:

julia> Pkg.add("LightGraphs")

Current functionality

  • core functions: vertices and edges addition and removal, degree (in/out/histogram), neighbors (in/out/all/common)

  • distance within graphs: eccentricity, diameter, periphery, radius, center

  • distance between graphs: spectral_distance, edit_distance

  • connectivity: strongly- and weakly-connected components, bipartite checks, condensation, attracting components, neighborhood

  • operators: complement, reverse, reverse!, union, join, intersect, difference, symmetric difference, blkdiag, induced subgraphs, products (cartesian/scalar)

  • shortest paths: Dijkstra, Dijkstra with predecessors, Bellman-Ford, Floyd-Warshall, A*

  • small graph generators: see smallgraphs.jl for list

  • random graph generators: Erdős–Rényi, Watts-Strogatz, random regular, arbitrary degree sequence, stochastic block model

  • centrality: betweenness, closeness, degree, pagerank, Katz

  • traversal operations: cycle detection, BFS and DFS DAGs, BFS and DFS traversals with visitors, DFS topological sort, maximum adjacency / minimum cut, multiple random walks

  • flow operations: maximum flow

  • matching: Matching functions have been moved to LightGraphsExtras.jl.

  • clique enumeration: maximal cliques

  • linear algebra / spectral graph theory: adjacency matrix (works as input to GraphLayout and Metis), Laplacian matrix, non-backtracking matrix

  • community: modularity, community detection, core-periphery, clustering coefficients

  • persistence formats: LightGraphs natively supports a proprietary compressed format. For other formats, please see the GraphIO.jl package.

  • visualization: integration with GraphPlot, Plots via PlotRecipes, GraphLayout, TikzGraphs, NetworkViz

Core API

These functions are defined as the public contract of the LightGraphs.AbstractGraph interface.

Constructing and modifying the graph

  • Graph
  • DiGraph
  • add_edge!
  • rem_edge!
  • add_vertex!, add_vertices!
  • rem_vertex!
  • zero

Edge/Arc interface

  • src
  • dst
  • reverse
  • ==
  • Pair / Tuple conversion

Accessing state

  • nv
  • ne
  • vertices (Iterable)
  • edges (Iterable)
  • neighbors, in_neighbors, out_neighbors
  • has_vertex
  • has_edge
  • has_self_loops (though this might be a trait or an abstract graph type)
  • is_directed (implemented via traits)
  • eltype (for edges and graphs)

Non-Core APIs

These functions can be constructed from the Core API functions but can be given specialized implementations in order to improve performance.

  • adjacency_matrix
  • degree

This can be computed from neighbors by default degree(g,v) = length(neighbors(g,v)) so you don't need to implement this unless your type can compute degree faster than this method.

Supported Versions

  • LightGraphs master is designed to work with the latest stable version of Julia.
  • Julia 0.3: LightGraphs v0.3.7 is the last version guaranteed to work with Julia 0.3.
  • Julia 0.4: LightGraphs versions in the 0.6 series are designed to work with Julia 0.4.
  • Julia 0.5: LightGraphs versions in the 0.7 series are designed to work with Julia 0.5.
  • Julia 0.6: LightGraphs versions in the 0.8 and 0.9 series are designed to work with Julia 0.6.
  • Later versions: Some functionality might not work with prerelease / unstable / nightly versions of Julia. If you run into a problem, please file an issue.

Contributing and Reporting Bugs

We welcome contributions and bug reports! Please see CONTRIBUTING.md for guidance on development and bug reporting.