Heatmap using non-numeric (categorical) colormaps

[diegozea]

I want to include in MIToS some visualization for Multiple Sequence Alignments like alignfigR.
Is there a way with Plots to do a heatmap like plot for categorical variables?

[tbreloff]

This works right now on the tb_pyplot branch:

[diegozea]

I were asking for a case where z is the categorical/grouping variable.

[tbreloff]

I'm not sure I understand. (Your link doesn't work... maybe fixing that would help explain?)

[diegozea]

I'm sorry. The link is: http://stackoverflow.com/questions/12998372/heatmap-like-plot-but-for-categorical-variables

[tbreloff]

So really what you're asking is if the colormap can have non-numeric data as it's values? I don't think it's possible out of the box... it's on the list.

[diegozea]

Exactly, I renamed the issue ;) Thanks!

[tbreloff]

Note: here's one possible method for pyplot: https://gist.github.com/jakevdp/8a992f606899ac24b711

[tbreloff]

Getting closer:

I want to accept a Plots.ColorVector which makes it a discrete colormap. Right now it only accepts a Plots.ColorGradient with a continuous colormap. It works though! (sort of)

[tbreloff]

Good progress!

[diegozea]

That looks really great!

[diegozea]

I'm getting the following error with axiscolor=nothing and also with border=nothing

heatmap(ys,xs,z',yflip=true, grid=false, ratio=:equal, axiscolor=nothing)

MethodError: `convertColor` has no method matching convertColor(::Void)
Closest candidates are:
  convertColor(::Any, !Matched::Real)
  convertColor(::Any, !Matched::Void)

 in getPyPlotColor at /home/dzea/.julia/v0.4/Plots/src/backends/pyplot.jl:91
 in updateAxisColors at /home/dzea/.julia/v0.4/Plots/src/backends/pyplot.jl:849
 in finalizePlot at /home/dzea/.julia/v0.4/Plots/src/backends/pyplot.jl:1062
 in writemime at /home/dzea/.julia/v0.4/Plots/src/backends/pyplot.jl:1108
 in writemime at /home/dzea/.julia/v0.4/Plots/src/output.jl:118
 in writemime at multimedia.jl:43
 in sprint at iostream.jl:206
 in display_dict at /home/dzea/.julia/v0.4/Plots/src/Plots.jl:280

[diegozea]

Also I'm getting the following error:

@show z'
heatmap(z', yflip=true, grid=false, ratio=:equal)

z' = ASCIIString["B" "C" "A" "B" "B" "C" "C" "A" "A" "A" "A" "C" "C" "B" "B"
            "A" "C" "C" "B" "B" "C" "C" "A" "A" "B" "A" "A" "A" "C" "C"
            "B" "A" "C" "A" "B" "B" "A" "C" "B" "C" "B" "C" "B" "C" "C"
            "C" "A" "C" "B" "B" "A" "B" "B" "B" "A" "A" "C" "C" "A" "B"]
LoadError: type Void has no field surf

[diegozea]

Why am I seeing blue lines with the recipe?