StratomeX app in Caleydo Web with rudimentary Provenance support
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README.md

StratomeX - Clustering [Fork]

This is a fork of the original StratomeX repository to integrate dynamic, server-side clustering on genomic data and analyze the confidence or ambiguity of cluster assignments. It is implemented as Caleydo web plugin: https://github.com/Caleydo/caleydo_web

Demo-Version of the tool: http://ec2-52-58-105-31.eu-central-1.compute.amazonaws.com/

Features:

  • Supports application of clustering algorithms (k-means, hierarchical, affinity propagation, fuzzy) to genomic data.
  • Creates views showing the distances/correlation/probability of each record in one cluster to the cluster centroid and the distances/correlation/probability of each patient to all other cluster.
  • Provides splitting of one cluster into three different subsets (well-fitting, uncertain, bad-fitting) to further analyze how well the records fit into one cluster.
  • Supports refinement of clusters/groups (shifting to better fits, merging, exclusion)
  • Support dynamical increase/reduction of the number of clusters in hierarchical cluster results.

Installation:

Future Work:

  • See Issues section for further information.