Here is a test case of an SRAM array: sramlvs.tar.gz
There is a run script to run the lvs on a 2X2 and a 2X4 array; in the 2X4 array the 2X2 array is a subcell.
For the 2X2 array the lvs is OK but for the 2X4 array it fails and I don't see why.
I am using klayout version 0.27.8