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As internally KLayout internally identifies MainWindow with PluginRoot, but does not expose this identity as an implementation detail, the Python class mapping is getting messed up.
One symptom is the result of
pya.PluginRoot.instance()
which is a MainWindow object, but does not implementat the PluginRoot object. The other way has been reported too: "pya.MainWindow.instance()" apparently returns a "PluginRoot" object as well (https://www.klayout.de/forum/discussion/1140/the-return-type-of-pya-mainwindow-instance-is-sometimes-wrong#latest).
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