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Public facing repository for the MHCnuggets method: Class I and Class II Neoantigen Prediction
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mhcnuggets
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MANIFEST.in Python 3 compatibility fix, manifest include files update, readme cop… Jul 1, 2019
README.md
setup.py

README.md

MHCnuggets

Welcome to MHCnuggets! Presumably you're here to do some peptide-MHC prediction and not because you were hungry.

Usage

For an overview of how to use MHCnuggets please refer to the Jupyter notebook called user_guide.ipynb in the repository

Installation

MHCnuggets is pip installable as:

pip install mhcnuggets

Required pacakges:

  • numpy
  • scipy
  • scikit-learn
  • pandas
  • tensorflow
  • keras

You might want to check if the Keras backend is configured to use the Tensforflow backend.

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