need to use collation for updates

KarrLab · May 25, 2020 · ce0c543 · ce0c543
1 parent 246f11b
commit ce0c543
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/datanator/data_source/uniprot_nosql.py b/datanator/data_source/uniprot_nosql.py
@@ -287,7 +287,8 @@ def fill_abundance_publication(self, start=0):
                     print("No pax doc found for uniprot doc {}, abundance entry {}; skip is at {}".format(doc["_id"], j, i))
                     break
             self.collection.update_many({"uniprot_id": doc["uniprot_id"]},
-                                        {"$set": {"abundances": abundances}})
+                                        {"$set": {"abundances": abundances}},
+                                        collation=self.collation)