From bc59b04c0ec6eaa437904338d60914b7f3cb36db Mon Sep 17 00:00:00 2001
From: Jonathan Karr <jonrkarr@gmail.com>
Date: Fri, 31 Aug 2018 12:11:27 -0400
Subject: [PATCH] adding installation of deps to CircleCI builds to upgrade
 packages when explicitly requested in requirements files; adding upgrading of
 karr lab packages to CircleCI builds

---
 .circleci/config.yml | 14 ++++++++++----
 1 file changed, 10 insertions(+), 4 deletions(-)

diff --git a/.circleci/config.yml b/.circleci/config.yml
index d427374..71aaf63 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -14,9 +14,9 @@ jobs:
       # Load packages from cache
       - restore_cache:
           keys:
-            - cache-v5-{{ .Branch }}-{{ checksum "requirements.txt" }}
-            - cache-v5-{{ .Branch }}-
-            - cache-v5-     
+            - cache-v6-{{ .Branch }}-{{ checksum "requirements.txt" }}
+            - cache-v6-{{ .Branch }}-
+            - cache-v6-     
 
       # Python 3 installation tasks
       - run:
@@ -28,13 +28,19 @@ jobs:
       - run:
           name: Install package configuration files including credentials
           command: karr_lab_build_utils3 download-install-package-config-files
+      - run:
+          name: Install and upgrade requirements (Python 3)
+          command: |
+            set +e
+            karr_lab_build_utils3 install-requirements
+            karr_lab_build_utils3 upgrade-karr-lab-packages
       - run:
           name: Install package (Python 3)
           command: pip3 install -U --process-dependency-links -e .[all]
 
       # Save packages to cache
       - save_cache:
-          key: cache-v5-{{ .Branch }}-{{ checksum "requirements.txt" }}
+          key: cache-v6-{{ .Branch }}-{{ checksum "requirements.txt" }}
           paths:
             - /usr/local/lib/python3.6/site-packages