correct file upload

KarrLab · Jan 8, 2019 · 29ed515 · 29ed515
1 parent cf3e240
commit 29ed515
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Showing 3 changed files with 5 additions and 4 deletions.
diff --git a/gen_ref_model.py b/gen_ref_model.py
@@ -16,6 +16,7 @@
             knowledge_base=kb,
             component_generators=[prokaryote.InitalizeModel,
                                   prokaryote.TranscriptionSubmodelGenerator,
+                                  prokaryote.RnaDegradationSubmodelGenerator,
                                   prokaryote.MetabolismSubmodelGenerator]).run()
 
 wc_lang.io.Writer().run('/media/sf_VM_share/model_inspect.xlsx', model, set_repo_metadata_from_path=False)
diff --git a/model_inspect.xlsx b/model_inspect.xlsx
diff --git a/wc_model_gen/prokaryote/metabolism.py b/wc_model_gen/prokaryote/metabolism.py
@@ -188,10 +188,10 @@ def gen_rate_laws(self):
             assert error is None, str(error)
 
         # Apply correction terms if translation submodel is present
-        if model.submodels.get_one(id='translation'):
-            gtp_corr_rate = self.calc_gtp_corr_rate()
-            model.parameters.get_one(id='k_cat_transfer_gmp').value += gtp_corr_rate
-            model.parameters.get_one(id='k_cat_conversion_gmp_gtp').value += gtp_corr_rate
+        #if model.submodels.get_one(id='translation'):
+        #    gtp_corr_rate = self.calc_gtp_corr_rate()
+        #    model.parameters.get_one(id='k_cat_transfer_gmp').value += gtp_corr_rate
+        #    model.parameters.get_one(id='k_cat_conversion_gmp_gtp').value += gtp_corr_rate
 
     """ Auxiliary functions """